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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASSGYRSVVYFVNWAIYGRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQL
YLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVLLLKEVRTA
LDSYSAANAGGQHFLLTVASPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTA
LDLYRAGGVPANKIVLGMPLYGRSFANTDGPGKPYNGVGQGSWENGVWDYKALPQAGATEHVLPDIMASYSYDATNKFLI
SYDNPQVANLKSGYIKSLGLGGAMWWDSSSDKTGSDSLITTVVNALGGTGVFEQSQNELDYPVSQYDNLRNGMQT

The query sequence (length=395) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2a3c:A 395 395 1.0000 1.0000 1.0000 0.0 2a3a:A, 2a3a:B, 2a3b:A, 2a3b:B, 2a3c:B, 2a3e:A, 2a3e:B, 3ch9:A, 3ch9:B, 3chc:A, 3chc:B, 3chd:A, 3chd:B, 3che:A, 3che:B, 3chf:A, 3chf:B, 2iuz:A, 2iuz:B, 1w9u:A, 1w9u:B, 1w9v:A, 1w9v:B
2 1ll4:A 392 390 0.6557 0.6607 0.6641 0.0 1ll4:B, 1ll4:C, 1ll4:D
3 3g6m:A 388 392 0.5671 0.5773 0.5714 2.75e-165
4 7akq:A 389 392 0.5823 0.5913 0.5867 6.07e-164 6epb:A, 6ylj:A, 6yn4:A
5 6kst:B 372 384 0.3316 0.3522 0.3411 4.43e-68 6kxl:A, 6kxl:B, 6kxm:A, 6kxm:B, 6kxn:A, 6kxn:B
6 6bt9:B 626 441 0.3646 0.2300 0.3265 2.77e-59 6bt9:A
7 5nr8:A 377 357 0.2911 0.3050 0.3221 8.17e-44 1hki:A, 1hkj:A, 1hkk:A, 1hkm:A, 6jjr:A, 6jk6:A, 5nra:A, 5nrf:A, 1waw:A, 1wb0:A, 6ze8:A, 6ze8:B, 6ze8:C, 6ze8:D, 6ze8:E, 6ze8:F
8 3arq:A 575 420 0.3266 0.2243 0.3071 2.68e-43 3arp:A, 3arr:A, 3art:A, 3aru:A, 3arv:A, 3arw:A, 3arx:A, 3ary:A, 3arz:A, 3as0:A, 3as1:A, 3as2:A, 3as3:A, 8hrf:A, 8hrf:B
9 8c6z:A 573 424 0.3139 0.2164 0.2925 2.67e-42 8ovr:A
10 7vrg:A 540 397 0.3038 0.2222 0.3023 1.03e-40 5gqb:A, 6jmn:A, 7vrg:B
11 8fr9:B 374 390 0.2937 0.3102 0.2974 1.09e-39 8frb:D
12 6jmb:A 374 368 0.2709 0.2861 0.2908 1.67e-39
13 2aos:A 361 359 0.2759 0.3019 0.3036 1.78e-39 2fdm:A, 4mav:A, 4ml4:A, 4nsb:A, 2olh:A, 4q7n:A, 5z05:A, 5z3s:A, 5z4w:A, 1zbc:A, 1zbk:A, 1zbv:A, 1zbw:A, 1zl1:A
14 1ffq:A 540 389 0.2962 0.2167 0.3008 4.70e-39 7fd6:A, 2wk2:A, 2wly:A, 2wlz:A, 2wm0:A, 1x6n:A
15 5df0:A 528 388 0.3063 0.2292 0.3119 5.39e-39 5df0:B
16 6le7:A 381 392 0.2987 0.3097 0.3010 7.48e-39 6le8:A
17 8r42:B 362 357 0.2810 0.3066 0.3109 1.71e-38 8r41:A, 8r41:B, 8r42:A, 8r4x:A, 8r4x:B, 8r4x:C, 8r4x:D
18 3fy1:A 377 391 0.2886 0.3024 0.2916 2.56e-38 3fy1:B, 3rm4:A, 3rm4:B, 3rm8:A, 3rm8:B, 3rm9:A, 3rm9:B, 3rme:A, 3rme:B, 2ybt:A, 2ybt:B, 2ybt:C, 2ybt:D, 2ybt:E, 2ybt:F, 2ybu:A, 2ybu:B, 2ybu:C, 2ybu:D, 2ybu:E, 2ybu:F
19 1e6z:B 498 390 0.2835 0.2249 0.2872 8.99e-35 7c34:A, 7c34:B, 7c92:A, 7c92:B, 7cb1:A, 7cb1:B, 1e6r:A, 1e6r:B, 1e6z:A, 1h0g:B, 1h0g:A, 1h0i:A, 1h0i:B, 6jk9:A, 6jk9:B, 6jkf:A, 6jkf:B, 1o6i:A, 1o6i:B, 1ogg:A, 1ogg:B, 1ur8:A, 1ur8:B, 1ur9:A, 1ur9:B, 1w1p:A, 1w1p:B, 1w1t:A, 1w1t:B, 1w1v:A, 1w1v:B, 1w1y:A, 1w1y:B, 3wd1:A, 3wd2:A, 3wd3:A, 3wd4:A, 4z2g:A, 4z2h:A, 4z2i:A, 4z2j:A, 4z2k:A, 4z2l:A
20 3wqv:A 383 378 0.2557 0.2637 0.2672 2.10e-33 3wqw:A
21 8ose:A 563 402 0.2835 0.1989 0.2786 6.61e-33 8owf:A
22 4r5e:A 343 350 0.2608 0.3003 0.2943 8.34e-32
23 6jav:A 377 379 0.2684 0.2812 0.2797 4.05e-30 6jaw:A, 6jax:A, 6jay:A
24 6hm1:A 386 327 0.2532 0.2591 0.3058 1.70e-26
25 6t9m:AAA 350 345 0.2354 0.2657 0.2696 5.01e-26
26 1e9l:A 372 363 0.2506 0.2661 0.2727 1.49e-25
27 8hw8:A 326 281 0.2051 0.2485 0.2883 3.51e-22
28 1jne:A 400 381 0.2456 0.2425 0.2546 8.60e-13
29 3co4:A 311 284 0.1823 0.2315 0.2535 2.78e-05
30 5jh8:A 317 255 0.1570 0.1956 0.2431 0.002
31 4hmd:A 528 193 0.1342 0.1004 0.2746 0.013 4mb4:A, 4mb5:A
32 5kz6:A 327 103 0.0810 0.0979 0.3107 0.014 3n13:A, 3n15:A, 3n17:A, 3n18:A, 3n1a:A
33 6ve1:C 268 92 0.0785 0.1157 0.3370 0.048 1c8y:A, 6ve1:B, 6ve1:D
34 4axn:A 316 199 0.1392 0.1741 0.2764 0.12 4axn:B
35 6kpm:A 295 86 0.0633 0.0847 0.2907 0.17 6kpn:A, 6kpo:A
36 4wiw:D 349 185 0.1038 0.1175 0.2216 0.20 4wiw:A, 4wiw:B, 4wiw:C, 4wiw:E, 4wiw:F
37 4tx8:A 374 58 0.0481 0.0508 0.3276 0.34
38 5i0g:B 730 40 0.0354 0.0192 0.3500 2.5 5f7s:A, 5f7s:B, 5i0e:B, 5i0f:B
39 7puk:A 425 110 0.0835 0.0776 0.3000 3.6 7puj:A, 7puk:C
40 4l80:C 347 59 0.0481 0.0548 0.3220 3.8 6kkh:C, 6kkh:F, 6kkh:I, 6kkh:L, 4l80:A, 4l80:B, 4l80:D, 4l80:F, 4l80:E
41 3omb:A 503 49 0.0430 0.0338 0.3469 4.9
42 7jzw:B 306 52 0.0354 0.0458 0.2692 4.9 6b44:B, 6b45:B, 6b47:B, 6b48:B, 7ecv:B, 7ecw:B, 7elm:B, 7elm:L, 7eln:B, 7eln:L, 7eqg:C, 7jzx:B, 7jzy:B, 7jzz:B, 6ne0:B, 7t3j:B, 7t3k:B, 7t3k:b, 7t3l:B, 7t3l:b, 7taw:B, 7taw:b, 7tax:B, 5uz9:B, 6vqv:D, 6vqw:C, 6vqx:C, 6w1x:B, 7we6:B, 7we6:L, 6whi:B, 7yhs:E
43 8tpu:S8 317 79 0.0557 0.0694 0.2785 5.9
44 6v55:A 746 58 0.0456 0.0241 0.3103 6.5
45 8fw1:A 362 92 0.0608 0.0663 0.2609 7.0 8fw1:B, 8fw1:C, 6myw:A, 6myw:B, 6myw:C, 6myw:D, 6o08:A, 8vcn:A
46 8u9f:A 271 57 0.0481 0.0701 0.3333 8.2 8u48:B, 8u48:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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