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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASSFLDTFEGYFDQRKIVRTNAKSRHTMSMAPDVTREEFSLVSNFFNENFQKRPRQKLFEIQKKMFPQYWFELTQGFSLL
FYGVGSKRNFLEEFAIDYLSPKIAYSQLSIPCLILNGYNPSCNYRDVFKEITDLLVPAELTRSETKYWGNHVILQIQKMI
DFYKNQPLDIKLILVVHNLDGPSIRKNTFQTMLSFLSVIRQIAIVASTDHIYAPLLWDNMKAQNYNFVFHDISNFEPSTV
ESTFQDVM

The query sequence (length=248) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zr1:B 374 250 1.0000 0.6631 0.9920 0.0 7mca:B, 6rqc:B, 7tjf:B, 7tjh:B, 7tji:B, 7tjj:B, 7tjk:B, 5v8f:B
2 6wgi:B 325 228 0.8992 0.6862 0.9781 2.71e-164
3 7jps:B 199 187 0.2097 0.2613 0.2781 1.30e-23
4 7jk2:B 285 203 0.2419 0.2105 0.2956 2.40e-23
5 2aaz:A 305 41 0.0685 0.0557 0.4146 0.62 2aaz:B, 2aaz:C, 2aaz:D, 2aaz:E, 2aaz:F, 2aaz:G, 2aaz:H, 2aaz:I, 2aaz:J, 2aaz:K, 2aaz:L, 2aaz:M, 2aaz:N, 2aaz:O, 2aaz:P
6 3k4y:A 260 30 0.0565 0.0538 0.4667 1.3 3k4y:B, 3k52:A, 3k52:B, 3k56:A, 3k56:B
7 8jpg:A 469 38 0.0444 0.0235 0.2895 5.0 3a4u:A, 4gkx:A, 4gkx:B, 4gkx:C, 4gkx:D, 4gkx:E, 4gkx:F, 4gky:A, 8jp4:A, 8jp4:B, 8jp4:E, 8jp4:F, 8jp5:A, 8jp5:B, 8jp5:E, 8jp5:F, 8jp6:A, 8jp6:B, 8jp6:E, 8jp6:F, 8jp7:A, 8jp7:B, 8jp7:E, 8jp7:F, 8jp8:A, 8jp8:B, 8jp8:E, 8jp8:F, 8jp9:A, 8jp9:B, 8jp9:E, 8jp9:F, 8jpg:B, 8jpg:E, 8jpg:F, 3lcp:A, 3lcp:B, 3whu:A, 3wnx:A, 4ygc:A, 4ygc:C, 4ygc:E, 4ygc:G, 4ygd:A, 4ygd:C, 4ygd:E, 4ygd:G, 4yge:A
8 7oya:11 138 55 0.0565 0.1014 0.2545 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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