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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASRVFIVGGHITPFVGKGSPLFIDKKHPDFGKKKNMTLEEILATTVQGTMEHSGLSGREGIVDQVVVGNFLGELFSSQGH
LGPAAIGSLTYGQAGSKNPLMYKPAMRVEGAAASGGLAVISAMNALKSGSADITLAVGVEVQTTASARVGGDYLARAADY
QRQRQLDDFTFPCLFAKRMKYIAEHNHFTMEDTARVAAKAYANGNKNPLAHMHTRKLTFEQCNGEDPSNVKFLGNETYKE
YLRMTDCSQVSDGGAGVVLANEEGLRKMGLSPNDSRLVEIKSIACAVSNLYEDPDDACCMFTSRQAAQKALSMANIKPSD
LNVAEVHDCFTIAEMLMYEALGIAEYGHAKDLIRNGDTTLEGRIPVNTGGGLLSFGHPVGATGIKQIMEVYRQMKGQCEA
YQMKKIPALGATLNMGGDDKTAVSAVLQNI

The query sequence (length=430) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5lnq:A 430 430 1.0000 1.0000 1.0000 0.0 5lnq:B, 5lnq:D, 5lot:A, 5lot:B, 5lot:D, 3zbn:A, 3zbn:B, 3zbn:D
2 6esq:A 392 375 0.2767 0.3036 0.3173 1.35e-40 6esq:B, 6esq:C, 6esq:D
3 4yzo:C 347 320 0.2302 0.2853 0.3094 7.72e-35 4yzo:D
4 7pyt:B 392 314 0.1930 0.2117 0.2643 1.04e-34 7pyt:D, 7yxm:B, 7yxm:D
5 6hsj:B 390 407 0.2535 0.2795 0.2678 8.60e-32 6hsp:B
6 5mg5:L 396 123 0.0977 0.1061 0.3415 5.44e-13 5mg5:C, 5mg5:O, 5mg5:R
7 5ab6:D 396 197 0.1163 0.1263 0.2538 3.98e-11 5ab6:A, 5ab6:B, 5ab6:C, 5ab6:E, 5ab6:F, 5ab7:A, 5ab7:B, 5ab7:C, 5ab7:D, 5ab7:E, 5ab7:F
8 4o9c:C 393 390 0.2233 0.2443 0.2462 9.06e-10
9 6bn2:A 393 389 0.2163 0.2366 0.2391 5.72e-09
10 4ubt:A 396 298 0.1674 0.1818 0.2416 5.02e-07 4ubt:B, 4ubt:C, 4ubt:D, 4ubu:A, 4ubu:B, 4ubu:C, 4ubu:D, 4ubu:E, 4ubu:F, 4ubu:G, 4ubu:H, 4ubv:A, 4ubv:B
11 6aqp:C 399 315 0.1628 0.1754 0.2222 4.83e-06 6aqp:A, 6aqp:B, 6aqp:D, 6are:A, 6are:B, 6are:C, 6are:D
12 5f38:D 394 217 0.1279 0.1396 0.2535 3.63e-05 5f38:B, 5f38:C
13 6bjb:A 384 181 0.0953 0.1068 0.2265 5.58e-05 6bjb:B
14 2d3t:C 390 152 0.0860 0.0949 0.2434 1.31e-04 2d3t:D, 1wdk:C, 1wdk:D, 1wdl:C, 1wdl:D, 1wdm:C, 1wdm:D
15 8gqm:A 377 141 0.0884 0.1008 0.2695 2.52e-04
16 4xl4:A 392 426 0.2233 0.2449 0.2254 2.95e-04 4xl4:B
17 8gqn:A 390 179 0.1047 0.1154 0.2514 7.45e-04 8gqn:B, 8gqn:C, 8gqn:D
18 1wl4:A 394 349 0.1860 0.2030 0.2292 8.11e-04
19 1ou6:A 392 151 0.0907 0.0995 0.2583 0.001 1dlv:A, 1dlv:B, 1dlv:C, 1dlv:D, 1dm3:A, 1dm3:B, 1dm3:C, 1dm3:D, 7lbz:A, 7lbz:B, 7lbz:C, 7lbz:D, 7lca:A, 7lca:B, 7lca:C, 7lca:D, 7lcl:A, 7lcl:B, 7lcl:C, 7lcl:D, 7ld2:A, 7ld2:B, 7ld2:C, 7ld2:D, 7ldc:A, 7ldc:B, 7ldc:C, 7ldc:D, 7ldt:A, 7ldt:B, 7ldt:C, 7ldt:D, 7ldu:A, 7ldu:B, 7ldu:C, 7ldu:D, 7ldv:A, 7ldv:B, 7ldv:C, 7ldv:D, 7ldw:A, 7ldw:B, 7ldw:C, 7ldw:D, 1m1o:A, 1m1o:B, 1m3z:A, 1m3z:B, 1m3z:C, 1m3z:D, 1nl7:A, 1nl7:B, 1ou6:B, 1qfl:A, 1qfl:B, 1qfl:C, 1qfl:D, 2vtz:A, 2vtz:B, 2vtz:C, 2vtz:D, 2vu0:A, 2vu0:B, 2vu1:A, 2vu1:B, 2vu2:A, 2vu2:B, 2wkt:A, 2wkt:B, 2wkt:C, 2wkt:D, 2wku:A, 2wku:B, 2wkv:A, 2wkv:B, 2wkv:C, 2wkv:D, 2wl4:A, 2wl4:B, 2wl5:A, 2wl5:B, 2wl5:C
20 2ib8:D 393 150 0.0767 0.0840 0.2200 0.028 2f2s:A, 2f2s:B, 2f2s:C, 2f2s:D, 2ib8:A, 2ib8:B, 2ib8:C, 2ib9:A, 2ib9:B, 2ib9:C, 2ib9:D, 2ibu:A, 2ibu:B, 2ibu:C, 2ibu:D, 2ibw:A, 2ibw:B, 2ibw:C, 2ibw:D, 2iby:A, 2iby:B, 2iby:C, 2iby:D
21 4c2j:D 395 150 0.0744 0.0810 0.2133 0.044 4c2j:A, 4c2j:B, 4c2j:C
22 7fea:B 396 147 0.0767 0.0833 0.2245 0.047 7ei4:A, 7ei4:B, 7ei4:C, 7ei4:D, 7fea:A, 7fea:C, 7fea:D
23 6pcb:A 403 324 0.1744 0.1861 0.2315 0.054 6pcb:B, 6pcb:C, 6pcb:D, 6pcc:A, 6pcc:B, 6pcc:C, 6pcc:D, 6pcd:A, 6pcd:B, 6pcd:D
24 5bz4:K 400 101 0.0512 0.0550 0.2178 0.061 5bz4:B, 5bz4:D, 5bz4:F, 5bz4:H
25 7o4t:D 403 139 0.0814 0.0868 0.2518 0.100 4b3i:C, 4b3j:C, 4b3j:D, 7o1i:D, 7o1l:D, 7o4r:C, 7o4r:D, 7o4s:C, 7o4s:D, 7o4t:C, 8opu:C, 8opu:D, 8opx:C, 8opx:D, 8opy:D, 8oql:C, 8oql:D, 8oqm:D, 8oqo:C, 8oqo:D, 8oqp:C, 8oqp:D, 8oqs:C, 8oqs:D, 8pf8:C, 8pf8:D
26 7cw5:B 394 146 0.0744 0.0812 0.2192 0.22 7cw5:A
27 6bja:A 382 299 0.1581 0.1780 0.2274 0.23
28 2ifw:A 206 63 0.0395 0.0825 0.2698 0.56 2ifr:A, 2ifw:B, 1s2k:A
29 7mvv:A 1542 42 0.0419 0.0117 0.4286 0.68 4knh:B, 7tbi:I1, 7tbi:I2, 7tbj:I1, 7tbj:I2, 7tbj:I3, 7tbj:I4, 7tbj:I5, 7tbk:I1, 7tbk:I2, 7tbk:I3, 7tbk:I4, 7tbk:I5, 7tbl:I1, 7tbl:I2, 7tbl:I3, 7tbl:I4, 7tbl:I5, 7tbm:I1, 7tbm:I2, 7tbm:I3, 7tbm:I4, 7tbm:I5
30 3dh7:A 318 75 0.0535 0.0723 0.3067 0.92 3dh7:B, 3dh7:C, 3dh7:D, 1vcf:A, 1vcf:B, 1vcg:A, 1vcg:B, 1vcg:C, 1vcg:D
31 5f9t:A 659 136 0.0767 0.0501 0.2426 1.3 5f9t:B, 4yw1:A, 4yw1:B, 4yw2:A, 4yw2:B, 4yw3:A, 4yw3:B, 4yw5:A, 4yw5:B, 4yz2:A, 4yz2:B, 4yz3:A, 4yz3:B, 4yz4:A, 4yz4:B, 4yz5:A, 4yz5:B
32 6ozf:B 225 52 0.0419 0.0800 0.3462 1.8 4b20:A, 4b20:B, 6ozf:A, 6ozg:A, 6ozg:B, 2w35:A, 2w35:B, 2w36:A, 2w36:B
33 3fm2:A 134 74 0.0465 0.1493 0.2703 8.6 3fm2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218