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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVS
GYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1j4u:A 149 149 1.0000 1.0000 1.0000 1.07e-106 1j4u:B, 1j4u:C, 1j4u:D, 1vbo:A, 1vbo:B, 1vbo:C, 1vbo:E, 1vbo:G, 1vbo:H, 1vbo:D, 1vbo:F, 1vbp:A, 1vbp:B
2 5m6o:A 150 149 0.8725 0.8667 0.8725 2.05e-93 5m6o:B, 5m6o:C, 5m6o:D, 5tqz:A, 5tqz:B, 5tqz:C, 5tqz:D
3 1xxr:B 154 150 0.7047 0.6818 0.7000 7.15e-69 1xxr:C, 1xxr:D
4 4ak4:A 133 138 0.5101 0.5714 0.5507 9.15e-41 4ak4:C, 4ak4:E, 4ak4:G, 4ak4:I, 4ak4:K, 4ak4:M, 4ak4:O, 4akb:A, 4akb:C, 4akb:E, 4akb:G, 4akc:A, 4akc:C, 4akc:E, 4akc:G, 5bn6:E, 5bn6:F, 5bn6:H, 5bn6:G, 5j4t:A, 5j4t:C, 5j4t:E, 5j4t:G, 5j4x:A, 5j4x:C, 5j4x:E, 5j4x:G, 5j50:A, 5j50:C, 5j50:E, 5j50:G, 5j51:A, 5j51:C, 5j51:E, 5j51:G, 1jac:A, 1jac:C, 1jac:E, 1jac:G, 5jm1:A, 5jm1:C, 5jm1:E, 5jm1:G, 1ku8:A, 1ku8:C, 1ku8:E, 1ku8:G, 1kuj:A, 1kuj:C, 1kuj:E, 1kuj:G, 1m26:A, 1m26:C, 1m26:E, 1m26:G, 1pxd:A, 4r6n:A, 4r6n:C, 4r6n:E, 4r6n:G, 4r6o:A, 4r6o:C, 4r6o:E, 4r6o:G, 4r6p:A, 4r6p:C, 4r6p:E, 4r6p:G, 4r6q:A, 4r6q:C, 4r6q:E, 4r6q:G, 4r6r:A, 4r6r:C, 4r6r:E, 4r6r:G, 1toq:A, 1toq:C, 1toq:E, 1toq:G, 1tp8:A, 1tp8:C, 1tp8:E, 1tp8:G, 1ugw:A, 1ugw:C, 1ugw:E, 1ugw:G, 1ugx:A, 1ugy:A, 1ugy:C, 1ugy:E, 1ugy:G, 1uh0:A, 1uh0:C, 1uh0:E, 1uh0:G, 1uh1:A, 1uh1:C, 1uh1:E, 1uh1:G, 1ws4:A, 1ws4:C, 1ws4:E, 1ws4:G, 1ws5:A, 1ws5:C, 1ws5:E, 1ws5:G
5 1jot:A 133 138 0.4899 0.5489 0.5290 3.61e-37 3lly:A, 3llz:A, 3lm1:A, 3lm1:E, 3lm1:M, 3lm1:C, 3lm1:G, 3lm1:K, 3lm1:I, 3lm1:O
6 1zgs:A 442 148 0.3893 0.1312 0.3919 1.50e-19 4mq0:A, 1zgs:B
7 1zgs:A 442 149 0.3960 0.1335 0.3960 3.90e-19 4mq0:A, 1zgs:B
8 1zgs:A 442 149 0.3557 0.1199 0.3557 4.65e-13 4mq0:A, 1zgs:B
9 6fly:A 144 147 0.3758 0.3889 0.3810 1.96e-18 6fly:B, 6flz:A, 6flz:B
10 1c3m:A 145 142 0.3289 0.3379 0.3451 7.78e-14 1c3n:A
11 4pit:B 144 147 0.3221 0.3333 0.3265 1.04e-13 2bmz:A, 2bmz:B, 2bn0:A, 2bn0:B, 8hyf:A, 3mit:A, 3mit:B, 3miu:A, 3miu:B, 3miv:B, 4pik:B, 4pik:C, 4pik:D, 4pik:A, 4pit:A, 4pit:C, 4pit:D, 1x1v:A, 1x1v:B
12 5xfi:A 152 146 0.3289 0.3224 0.3356 3.16e-08 5av7:A, 5av7:B, 5av7:C, 5av7:D, 5xfi:B
13 5gvy:A 145 157 0.3154 0.3241 0.2994 1.60e-07 5gvy:B, 5xfh:A
14 4ddn:A 154 55 0.1812 0.1753 0.4909 2.85e-07 4ddn:B, 4ddn:C, 4ddn:D, 3r51:A, 3r52:A, 3r52:B, 3r52:C, 3r52:D
15 7v4s:A 143 150 0.2819 0.2937 0.2800 6.66e-05
16 3apa:A 138 56 0.1477 0.1594 0.3929 1.52e-04 3vy6:A, 3vy7:A, 3vze:A, 3vzf:A, 3vzg:A
17 3ll2:A 123 51 0.1275 0.1545 0.3725 8.45e-04 2guc:A, 2guc:B, 2gud:A, 2gud:B, 2hyq:A, 2hyq:B, 2hyr:A, 2hyr:B, 2nuo:A, 2nuo:B, 7ria:A, 7ria:B, 7rib:A, 7rib:B, 7rib:C, 7rkg:A, 7rkg:B, 7rki:A, 7rki:B
18 6hqi:A 444 34 0.0872 0.0293 0.3824 1.2
19 5nuo:D 200 102 0.1745 0.1300 0.2549 4.0 8i8r:D, 5nuo:B, 5nuo:F, 5nup:E, 5nur:D
20 4zno:A 318 49 0.1074 0.0503 0.3265 5.4 4zno:B, 4znq:A, 4znq:B, 4znr:A, 4znr:B
21 5yrf:B 142 145 0.2349 0.2465 0.2414 5.8 5yrf:A, 5yrg:A, 5yrg:B, 5yri:B, 5yri:A, 5yrj:A, 5yrj:B, 5yrl:A, 5yrl:B, 5yrm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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