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BioLiP
>protein
ASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFMETELHCDEKTIIIGHSSGAIAA
MRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFT
DCGHFQNTEFHELITVVKSLLKVPALEHHHHH

The query sequence (length=192) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7oex:A 192 192 1.0000 1.0000 1.0000 2.84e-146 7oex:B
2 1y7i:B 262 96 0.1510 0.1107 0.3021 0.020 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
3 3bdv:A 191 115 0.1354 0.1361 0.2261 1.3
4 5ol2:A 331 79 0.1042 0.0604 0.2532 2.8 5ol2:D
5 3gzj:A 254 134 0.1667 0.1260 0.2388 3.6 3gzj:B, 3gzj:C, 3gzj:D
6 6qe2:A 257 24 0.0573 0.0428 0.4583 4.0 6qe2:B
7 3stu:B 259 33 0.0677 0.0502 0.3939 4.9 3stv:A, 3stw:A, 3stw:B, 3stx:A, 3stx:B
8 6jmg:A 267 23 0.0573 0.0412 0.4783 5.5 6jmg:B
9 8qd8:B 413 100 0.1458 0.0678 0.2800 7.5 8qd8:A, 8qd9:A, 8qd9:B
10 8yfq:R 746 49 0.0625 0.0161 0.2449 7.6
11 7zpq:CA 1742 53 0.0781 0.0086 0.2830 7.7 7zrs:CA, 7zuw:CA
12 7omd:B 310 34 0.0781 0.0484 0.4412 8.1 7omd:A, 7omo:A, 7omr:A, 2psj:A, 2psj:B, 6yn2:A, 6yn2:B
13 4g8b:A 277 74 0.1094 0.0758 0.2838 9.1 4g8b:B, 4g8c:A, 4g8c:B, 4g9e:A, 4g9e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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