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BioLiP
>protein
ASPKAEQRLRMAAQRADATAAPQPGISGPAPAFVHVIALDLAEEARKNPDTARDSAAAALRSWTELAARLHEESPHDIAE
GAASAGLLPASLMVTVGIGGSLLSAIDAEDRRPDALADLPEFSTDDLHPRWCGGDFMLQVGAEDPMVLTAAVEELVAAAA
DATAVRWSLRGFRRTAAAARDPDATPRNLMGQIDGTANPAQDHPLFDRTITARPADNPAHAWMDGGSYLVVRRIRMLLTE
WRKLDVAARERVIGRRLDTGAPLGSRNETLIPENAHVRLASPENNLGARMFRRGYSYDQGWRDDGVRDAGLLFMAWQGDP
ATGFIPVQRSLADQGDALNRYIRHEGSALFAVPAAREGRYLGQDLIEG

The query sequence (length=368) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fw4:A 368 368 1.0000 1.0000 1.0000 0.0 5fw4:B
2 8ck9:A 374 377 0.7853 0.7727 0.7666 0.0
3 4gs1:B 376 380 0.8071 0.7899 0.7816 0.0 4gs1:A
4 4gt2:A 371 376 0.4565 0.4528 0.4468 9.79e-90 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B
5 8rgs:A 366 354 0.3940 0.3962 0.4096 2.25e-68 4grc:A, 6i43:A, 6i43:B, 6i7c:A, 6i7c:B, 6i7z:A, 6i7z:B, 6i8e:A, 6i8e:B, 6i8i:A, 6i8i:B, 6i8j:A, 6i8j:B, 6i8k:A, 6i8k:B, 6i8o:A, 6i8o:B, 6i8p:A, 6i8p:B, 6i8q:A, 6i8q:B, 6i91:A, 6i91:B, 6ibn:A, 6ibn:B, 8olh:A, 8olh:B, 8olp:A, 8olp:B, 8omc:A, 8omc:B, 8pxp:A, 8pxp:B, 6q31:A, 6q31:B, 6q34:A, 6q34:B, 6q3d:A, 6q3d:B, 6q3e:A, 6q3e:B, 8rgs:B, 8rgw:A, 8rgw:B, 8rgy:A, 8rgy:B, 6tb8:A, 6tb8:B
6 8fjq:B 361 359 0.3995 0.4072 0.4095 2.79e-68 8fjq:A, 8fjr:A, 8fjr:B, 5jxu:A, 5jxu:B, 7rmu:A
7 6qzo:A 361 362 0.4022 0.4100 0.4088 7.90e-62 6qzo:B, 6qzo:C, 6qzo:D, 6qzo:E, 6qzo:F, 6qzo:G, 6qzo:H
8 7dlk:A 363 371 0.3397 0.3444 0.3369 1.97e-54 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
9 2y4e:A 384 370 0.3071 0.2943 0.3054 2.78e-43 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
10 6jbn:A 391 387 0.3152 0.2967 0.2997 7.79e-35 6jbn:B
11 5de0:B 298 228 0.1712 0.2114 0.2763 4.36e-10 5de0:A, 5de0:C, 5de0:D
12 7yzt:A 306 171 0.1332 0.1601 0.2865 2.91e-09 7yzt:B, 7yzt:C
13 3qns:A 311 244 0.1603 0.1897 0.2418 4.01e-08 4hov:A, 4hov:B, 4hov:C, 3qnr:A, 3qnr:B, 3qnr:C, 3vec:A, 3vec:B, 3vec:C, 3ved:A, 3ved:B, 3ved:C, 3vee:A, 3vee:B, 3vee:C, 3vef:A, 3vef:B, 3vef:C, 3veg:A, 3veg:B, 3veg:C
14 7bok:A 309 190 0.1304 0.1553 0.2526 3.91e-07 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
15 4gu7:A 310 95 0.0978 0.1161 0.3789 4.66e-07 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
16 2iiz:A 306 220 0.1332 0.1601 0.2227 3.35e-06
17 5vj0:D 300 143 0.1060 0.1300 0.2727 1.44e-05 5gt2:A, 5gt2:B, 5gt2:C, 5gt2:D, 5vj0:A, 5vj0:B, 5vj0:C
18 8u4z:A 313 176 0.1168 0.1374 0.2443 6.73e-05
19 7ylo:A 311 189 0.1087 0.1286 0.2116 2.48e-04 7ylo:B
20 4au9:A 448 330 0.2065 0.1696 0.2303 3.94e-04 5ag0:A, 5ag0:B, 5ag1:A, 5ag1:B, 4au9:B, 5ikd:A, 5ikg:A, 4uzi:A, 4uzi:B, 4w7j:A, 4w7j:B, 4w7j:C, 4w7j:D, 4w7k:A, 4w7k:B, 4w7l:A, 4w7l:B, 4w7m:A, 4w7m:B, 4w7n:A, 4w7n:B, 4w7o:A
21 6fiy:B 303 145 0.1033 0.1254 0.2621 0.003 6fiy:A, 6fks:A, 6fks:B, 6fkt:A, 6fkt:B, 6fl2:A, 6fl2:B, 6rpd:A, 6rpd:B, 6rpe:A, 6rpe:B, 6rqy:A, 6rqy:B, 6rr1:A, 6rr1:B, 6rr4:A, 6rr4:B, 6rr5:A, 6rr5:B, 6rr6:A, 6rr6:B, 6rr8:A, 6rr8:B
22 7anv:A 467 175 0.1114 0.0878 0.2343 0.005
23 7d8m:A 451 147 0.1114 0.0909 0.2789 0.007
24 7qyq:B 284 132 0.1168 0.1514 0.3258 0.032 7qyq:A, 7qyq:C, 7qyq:D, 7qyz:A, 7qza:A, 7qza:B, 7qza:C, 7qza:D, 7qza:E, 7qza:F, 7qza:G, 7qza:H
25 3h2s:A 216 94 0.0761 0.1296 0.2979 0.44 3h2s:B
26 6fsk:A 484 95 0.0707 0.0537 0.2737 0.86 6fsk:B, 6fsl:A, 6fsl:B
27 7jil:J 150 39 0.0462 0.1133 0.4359 2.0
28 8smg:B 76 24 0.0272 0.1316 0.4167 4.7 8smf:C, 8smf:H
29 5dor:B 161 54 0.0462 0.1056 0.3148 6.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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