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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASPGYRLSTLIEFLLHRAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQ
QAILFVDTADRLASLARDALVHAFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTTPP
QLANLTVANGRVKFRVEGEFEATLTVMGDDEILVEDKETGSMQISFIHQLVQSRLPLQDMYNCLHSFCLSLQLEVLHSQT
LMLIRERWGDLVQVERYHAGKCLSLSVWNQQVHKVTIKIPLQIFHDPKIDHLSIEKLLIDSVHARAHQKLQELKAILRGF
NANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQ
RCKQSIKHLPTISSETLQLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSPAMALLLQQFKENIQDAFNKVL
AHFVAMCDTNMPFVGLRLELS

The query sequence (length=501) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nvr:l 501 501 1.0000 1.0000 1.0000 0.0
2 6w1s:I 1077 454 0.7305 0.3398 0.8062 0.0
3 8k7x:A 673 101 0.0519 0.0386 0.2574 1.0 8k7y:A, 8k7y:E
4 7ane:aa 1514 50 0.0319 0.0106 0.3200 1.7
5 4z9n:B 324 32 0.0240 0.0370 0.3750 2.1 4z9n:A, 4z9n:C, 4z9n:D, 4z9n:E, 4z9n:F
6 6ces:A 300 98 0.0479 0.0800 0.2449 3.0 8dhb:B, 6s6a:A, 6s6a:B, 6s6d:A, 6s6d:B, 6sb0:C, 6sb0:I, 6sb2:C, 6sb2:I, 7t3a:K, 7t3b:D, 7t3c:D, 7t3c:K, 6u62:B, 6ulg:F, 7ux2:B, 7ux2:I, 7uxc:D, 7uxc:K, 7uxh:F, 7uxh:M, 7uxh:V, 7uxh:c, 6wj2:F, 6wj3:F
7 6nzd:F 227 98 0.0479 0.1057 0.2449 3.1
8 7wz3:Q 472 92 0.0459 0.0487 0.2500 3.1
9 7nvm:Q 538 92 0.0459 0.0428 0.2500 3.2 8i1u:H, 8i1u:P, 8i9u:H, 8i9u:P, 7nvl:Q, 7nvl:q, 7nvm:q, 7nvn:Q, 7nvn:q, 6qb8:q, 6qb8:Q, 8sfe:q, 8sfe:Q, 8sff:Q, 8sff:q, 8sg8:Q, 8sg8:q, 8sg9:Q, 8sg9:q, 8sgc:Q, 8sgc:q, 8sgl:Q, 8sgl:q, 8sgq:q, 8sgq:Q, 8sh9:Q, 8sh9:q, 8sha:Q, 8sha:q, 8shd:Q, 8shd:q, 8she:Q, 8she:q, 8shf:Q, 8shf:q, 8shg:Q, 8shg:q, 8shl:Q, 8shl:q, 8shn:Q, 8shn:q, 8sho:Q, 8sho:q, 8shp:Q, 8shp:q, 8shq:Q, 8shq:q, 8sht:Q, 8sht:q, 7trg:B, 7ttn:B, 7ttt:B, 7tub:B, 7wu7:H, 7wu7:P, 7wz3:q, 7x0s:J, 7x0s:P, 7x0v:J, 7x0v:P, 7x3j:Q, 7x3j:q, 7x3u:Q, 7x3u:q
10 8jyq:D 171 37 0.0299 0.0877 0.4054 9.0 8jyq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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