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BioLiP
>protein
ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA
AWRSYLSMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1aq3:A 129 129 0.9845 0.9845 0.9845 4.62e-92 1aq3:C, 1aq4:A, 1aq4:C, 2b2d:A, 2b2d:B, 2b2d:C, 2b2e:A, 2b2e:B, 2b2e:C, 2b2g:A, 2b2g:B, 2b2g:C, 2bny:A, 2bny:B, 2bny:C, 2bq5:A, 2bq5:B, 2bq5:C, 2bs0:A, 2bs0:B, 2bs0:C, 2bs1:A, 2bs1:B, 2bs1:C, 2bu1:A, 2bu1:B, 2bu1:C, 2c4q:A, 2c4q:B, 2c4q:C, 2c4y:A, 2c4y:B, 2c4y:C, 2c4z:A, 2c4z:B, 2c4z:C, 2c50:A, 2c50:B, 2c50:C, 2c51:A, 2c51:B, 2c51:C, 2iz8:A, 2iz8:B, 2iz8:C, 2iz9:A, 2iz9:C, 2izm:A, 2izm:B, 2izm:C, 2izn:A, 2izn:B, 2izn:C, 5msf:A, 5msf:C, 6msf:A, 6msf:C, 7msf:A, 7msf:C, 5tc1:D, 5tc1:E, 5tc1:G, 5tc1:H, 1u1y:A, 1u1y:C, 1zdh:A, 1zdh:C, 1zdi:A, 1zdi:C, 1zdj:A, 1zdj:C, 1zdk:A, 1zdk:C, 1zse:A, 1zse:B
2 4ang:A 131 126 0.2791 0.2748 0.2857 6.60e-06 4ang:B, 4ang:C
3 8jze:f 184 65 0.1318 0.0924 0.2615 0.14 8jzf:f
4 8jjr:f 169 34 0.0853 0.0651 0.3235 1.2
5 4fe1:F 141 76 0.2016 0.1844 0.3421 1.4 7fix:F1, 7fix:F2, 7fix:F3, 1jb0:F, 6k33:bF, 6k33:aF, 6k33:cF, 7m75:F, 7m76:F, 7m78:F, 3pcq:F, 6pfy:Q, 6pfy:F, 6pfy:d, 6pgk:Q, 6pgk:F, 6pgk:d, 6tra:F, 6trc:F, 6trc:f, 6trc:6, 6trd:F, 6trd:f, 6trd:6, 5zf0:F1, 5zf0:F2, 5zf0:F3, 5zf0:F4, 5zf0:F6, 5zf0:F5
6 3rss:A 494 66 0.1395 0.0364 0.2727 2.4 2ax3:A, 3rrb:A, 3rre:A, 3rrf:A, 3rrj:A, 3rs8:A, 3rs9:A, 3rsf:A, 3rsg:A, 3rsq:A, 3rt7:A, 3rt9:A, 3rta:A, 3rtb:A, 3rtc:A, 3rtd:A, 3rte:A, 3rtg:A, 3ru2:A, 3ru3:A
7 6ly5:f 162 71 0.1550 0.1235 0.2817 2.8 3lw5:F, 2o01:F, 2wsc:F, 2wse:F, 2wsf:F, 4xk8:F, 4xk8:f
8 5l8r:F 154 62 0.1395 0.1169 0.2903 3.9 7dkz:F, 4rku:F, 4y28:F, 6yac:F, 6yez:F, 6zoo:F, 6zxs:F
9 4cvq:A 404 44 0.1318 0.0421 0.3864 3.9 4cvq:B
10 7wfe:BF 154 62 0.1473 0.1234 0.3065 5.1 8j6z:F, 8j7a:F, 8j7b:F, 7wfd:AF, 7wg5:AF, 7wg5:BF, 8wgh:F
11 6joo:A 834 60 0.1473 0.0228 0.3167 5.5
12 2h0k:A 318 32 0.0930 0.0377 0.3750 5.9 2h0k:B, 2h0l:A, 2ie6:A, 2ie7:A, 1n41:A, 1n42:A, 1n44:A, 2ran:A
13 8i6y:A 844 29 0.0775 0.0118 0.3448 8.4 8i6y:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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