Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASMQKLINSVQNYAWGSKTALTELYGIANPQQQPMAELWMGAHPKSSSRITTNGETVSLRDAIEKNKTAMLGEAVANRFG
ELPFLFAVLCAAQPLSIQVHPNKRNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIVSLLQ
PVAGAHSAIAHFLQVPNAERLSQLFASLLNMQGEEKSRALAVLKAALNSQQGEPWQTIRVISEYYPDDSGLFSPLLLNVV
KLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFEPKPAGELLTAPVKSGAELDFPIPVD
DFAFSLHDLALQETSIGQHSAAILFCVEGEAVLRKDEQRLVLKPGESAFIGADESPVNASGTGRLARVYNKL

The query sequence (length=392) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3h1m:A 392 392 0.9949 0.9949 0.9949 0.0 3h1w:A, 3h1y:A, 5zvr:A, 5zvu:A, 5zvx:A
2 5nw7:A 440 321 0.2934 0.2614 0.3583 1.68e-46 1pmi:A
3 1zx5:A 300 78 0.0587 0.0767 0.2949 2.84e-05
4 1qwr:A 315 106 0.0842 0.1048 0.3113 0.020 1qwr:B
5 1qwr:A 315 161 0.0918 0.1143 0.2236 0.96 1qwr:B
6 8auv:C 117 71 0.0459 0.1538 0.2535 1.2 8b2l:C1
7 5o6u:F 336 120 0.0791 0.0923 0.2583 2.4 5o7h:F
8 8a82:A 354 30 0.0306 0.0339 0.4000 2.7
9 2h0v:A 335 55 0.0357 0.0418 0.2545 2.9 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
10 6oqo:A 269 85 0.0510 0.0743 0.2353 4.2 4aua:A, 4ez5:A, 8i0m:A, 5l2i:A, 5l2s:A, 5l2t:A, 3nup:A, 3nux:A, 6oql:A, 4tth:B
11 1blx:A 305 75 0.0485 0.0623 0.2533 4.4 2euf:B, 2f2c:B, 1xo2:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218