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BioLiP
>protein
ASLRYRRPYWMMFLKGVDNWKIYTVIQQPDHQRTEMLYQAWLGGLDRPYTRPKCMANQPLWLSKKRHMLRKERLDGPETP
LEKYVLEWHKKFHSFQGTERPTPDDLHTALDLVERPLDLSYALQLLGQCRNLNNIRFAKETFLVFLEACLRVGRRDCAEY
ALEHAEPLGFWFIDEDHRRYLQGEQTWYKLSPLDNLYYPVEENAKLN

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6sga:DP 212 207 1.0000 0.9764 1.0000 1.93e-156 6hiv:DP, 6hiw:DP, 6hiy:DP, 7pua:DP, 7pub:DP, 6sgb:DP
2 7aor:aq 198 198 0.8454 0.8838 0.8838 1.32e-133
3 7ane:aq 212 207 0.7874 0.7689 0.7874 1.78e-123
4 7z8f:e 4579 97 0.1353 0.0061 0.2887 2.7 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
5 8ptk:f 4502 97 0.1353 0.0062 0.2887 2.8 8ptk:e
6 8dy7:H 85 30 0.0628 0.1529 0.4333 8.5 8dy9:H
7 8b1t:B 1141 101 0.1353 0.0245 0.2772 9.8 8b1u:B, 7mr3:B, 6sjb:B, 6sje:B, 6sjf:B, 6sjg:B, 6t2u:B, 6t2v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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