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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ASLHIDDIPAAIKAVKQQLRQALPDYQQVFQAVEENIRQQVMEIRRNLAEGKNPVPQLHADDIINGKVTEEQKAQIKQRG
CCAILGVFPQEKATAWNREIGDYLDRNNFVERLKNANYFGTLAKPQIYGIYWSTPQVEARQDKRMQAVQIFLNNLWQTES
NGKQHFDANRVVTYADRTRRRPPKSSSLGLSPHVDGGSIERWLDENFRHVYRHVFSGQWQKYDPFAAEGRPEVREFPSPA
VCSMFRTFQGWTALTPQRTHAGTLNVIPIANAMAYILLRALQDDVADDDLCGAAPGRALSASEQWHPLLMEAISPIPDLE
AGDTVFWHCDVIHSVENEHNGEFDSNVMYIAAAPWCEKNAAYLPRQLASFIDGRSPPDFAADDFEVDFIGRATIKNLTEI
GKQQLGITD

The query sequence (length=409) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7twc:A 416 413 0.9976 0.9808 0.9879 0.0 7twe:A, 7twe:B
2 2csg:A 417 407 0.4743 0.4652 0.4767 9.68e-130
3 6akz:A 451 394 0.2836 0.2572 0.2944 1.59e-52
4 4irx:A 296 69 0.0489 0.0676 0.2899 1.1 4irx:B
5 7z8s:E 1514 29 0.0318 0.0086 0.4483 3.0 7zb5:E, 7zb5:H
6 7zke:E 1623 29 0.0318 0.0080 0.4483 3.2
7 7z7n:E 1306 29 0.0318 0.0100 0.4483 3.3
8 5epa:A 258 132 0.0782 0.1240 0.2424 4.6 5epa:B, 5epa:C, 5epa:D, 5epa:E, 5epa:F
9 8j1g:B 312 75 0.0440 0.0577 0.2400 8.3 8j1c:A, 8j1c:B, 8j1c:D, 8j1g:A, 8j1g:C, 8j1g:D
10 5ij7:B 469 71 0.0538 0.0469 0.3099 8.9 6b3w:A, 6b3w:B, 6c23:K, 6c24:K, 5ij7:A, 5ij8:A, 5ij8:B, 4w2r:A, 4w2r:B
11 7egq:X 524 87 0.0416 0.0324 0.1954 9.0 5c8s:B, 5c8s:D, 5c8t:B, 5c8t:D, 5c8u:B, 5c8u:D, 7diy:B, 7egq:K, 7eiz:K, 9fw2:B, 9fz4:B, 9fzk:B, 7mc5:A, 7mc6:A, 7n0b:B, 7n0c:B, 7n0d:B, 7n0d:D, 7n0d:F, 7n0d:H, 5nfy:A, 5nfy:B, 5nfy:C, 5nfy:D
12 5it7:rr 195 32 0.0318 0.0667 0.4062 9.2 6uz7:Br
13 5zlf:A 293 180 0.0929 0.1297 0.2111 9.2
14 5cjx:H 227 36 0.0244 0.0441 0.2778 9.9 5c7k:E, 5cjx:A, 5cjx:D, 6cm3:P, 6cm3:R, 6cm3:T, 8czz:C, 8czz:G, 8czz:K, 8dok:C, 8dok:G, 8dok:K, 6edu:P, 6edu:T, 8g6u:C, 8g6u:G, 8g6u:K, 8gpi:D, 8gpi:H, 8gpi:A, 8gpj:D, 8gpj:H, 8gpj:A, 5js9:E, 5jsa:E, 7kde:S, 7kde:Q, 7kde:O, 7mxe:H, 7mxe:A, 7mxe:M, 6nqd:C, 6nqd:G, 6nqd:K, 4p9h:H, 5thr:T, 5thr:R, 8ttw:C, 8ttw:G, 8ttw:K, 5viy:K, 5viy:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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