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BioLiP
>protein
ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN
LSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS
FEFALAIVEALNGKEVAAQVKAPLVLK

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3bwe:A 188 187 1.0000 0.9947 1.0000 1.68e-135 6af5:A, 6af9:A, 6afa:A, 6afb:A, 6afc:A, 6afd:A, 6afe:A, 6aff:A, 6afg:A, 6afh:A, 6afi:A, 6afj:A, 6afl:A, 3bwe:C, 3bwe:D, 3bwe:E, 3bwe:F, 4mnt:A, 4n0m:A, 4p35:A, 4p36:A, 7pa2:AAA, 7pa3:AAA, 8ppw:A, 8pq0:A
2 4k2h:D 186 176 0.2727 0.2742 0.2898 8.37e-15 4k2h:A, 4k2h:B, 4k2h:C, 4k2h:E, 4k2h:F, 4k2h:G, 4k2h:H, 4k2h:I, 4k2h:J, 4k2h:K, 4k2h:L, 4k2h:M, 4k2h:N
3 6f2f:A 166 169 0.2299 0.2590 0.2544 1.14e-08 6f2f:B, 6f2f:C, 6f2h:A, 6f2h:B, 6f2h:E, 6f2h:F, 6f2h:G, 6f2h:I, 6f2h:J, 6f2h:K, 6f2h:L, 6hf6:A, 6hf6:B, 6hf6:C
4 6und:B 230 140 0.2139 0.1739 0.2857 4.50e-07 8tsn:A, 6und:A, 8vq1:A
5 2vrn:A 185 106 0.1711 0.1730 0.3019 1.88e-05
6 5xr2:C 295 128 0.1872 0.1186 0.2734 8.47e-05 5xr3:E
7 4d1y:A 175 149 0.1872 0.2000 0.2349 6.37e-04 3cne:A, 3cne:B, 3cne:C, 3cne:D, 4d1y:B
8 1ons:A 278 196 0.2353 0.1583 0.2245 0.010
9 7asm:O 116 58 0.0802 0.1293 0.2586 0.096 7asn:O, 7aso:S, 7asp:O, 6ddd:C, 6ddg:C, 6fxc:AO, 6fxc:BO, 5hkv:N, 5hl7:N, 6hma:O, 5li0:T, 5nd8:T, 5nd9:T, 5ngm:AO, 7nhl:T, 7nhm:T, 5nrg:N, 8p2f:T, 8p2g:T, 8p2h:T, 7p48:O, 6s0x:O, 6s0z:O, 6s12:O, 6s13:O, 6sj6:T, 5t7v:L3, 5tcu:L3, 7ttu:C, 7ttw:C, 4wce:N, 4wf9:N, 4wfa:N, 4wfb:N, 6wqn:C, 6wqq:C, 6wrs:C, 6wru:C, 8y36:O, 8y37:O, 8y38:O, 8y39:O, 6yef:T
10 8buu:Q 118 30 0.0588 0.0932 0.3667 1.0 7aqc:Q, 7aqd:Q, 7as8:U, 7as9:U, 6ha1:Q, 6ha8:Q, 6htq:Q, 3j3v:Q, 3j3w:Q, 3j9w:BT, 5njt:j, 7o5b:n, 7ope:U, 6ppf:Q, 6ppk:Q, 6pvk:Q, 8qcq:Q, 7qgu:Q, 7qh4:Q, 8qpp:n, 7qv1:Q, 7qv2:Q, 7qv3:Q, 8r55:n, 8s1p:Q, 8s1u:Q, 7s9u:Q, 7sae:Q, 6tnn:j, 6tpq:j
11 5vj1:E 263 31 0.0802 0.0570 0.4839 1.5
12 6pv7:B 388 25 0.0588 0.0284 0.4400 1.6 6pv7:C, 6pv7:E, 6pv8:B, 6pv8:C, 6pv8:E
13 8s5h:A 507 89 0.1551 0.0572 0.3258 1.7 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
14 6o8w:R 118 30 0.0588 0.0932 0.3667 1.9 7nhk:T, 6o8x:R, 6o8y:R, 6o8z:R, 6o90:R, 7p7q:T, 7p7r:T, 7p7s:T, 7p7t:T, 7p7u:T, 6w6p:R, 6wu9:R
15 5h1y:B 245 90 0.1283 0.0980 0.2667 3.4 5h1y:A
16 3zyy:X 628 40 0.0749 0.0223 0.3500 3.4 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
17 6l5n:A 377 51 0.0909 0.0451 0.3333 6.4 6l5m:A, 6l5m:B, 6l5m:C, 6l5m:D, 6l5m:E, 6l5n:B, 6l5o:A
18 8bsd:A 301 53 0.0749 0.0465 0.2642 6.5 8a23:A, 7bq7:A, 8bzv:A, 8c0g:A, 7c2i:A, 7c2j:A, 8c5m:A, 9emj:A, 9eml:A, 9emv:A, 9eun:A, 8f4s:A, 8f4y:A, 9gny:A, 9grp:A, 9grq:A, 7jhe:A, 7jib:A, 7jpe:A, 7jyy:A, 7jyy:C, 7jz0:A, 7jz0:C, 7koa:A, 7l6r:A, 7l6t:A, 7lw3:A, 7lw4:A, 8osx:A, 8ot0:A, 8oto:A, 8otr:A, 8ov1:A, 8ov2:A, 8ov3:A, 8ov4:A, 7r1t:A, 7r1u:A, 3r24:A, 8rv4:A, 8rv5:A, 8rv6:A, 8rv7:A, 8rv8:A, 8rv9:A, 8rva:A, 8rvb:A, 8rzc:A, 8rzd:A, 8rze:A, 8s8w:A, 8s8x:A, 8tyj:A, 6w4h:A, 6w61:A, 6w75:A, 6w75:C, 6wjt:A, 6wjt:C, 6wkq:A, 6wkq:C, 6wks:AAA, 6wq3:A, 6wrz:A, 6wvn:A, 6xkm:A, 2xyq:A, 2xyr:A, 2xyv:A, 6yz1:A
19 8enl:C 382 81 0.1230 0.0602 0.2840 8.5
20 4hf1:A 129 56 0.0963 0.1395 0.3214 9.4 4chu:A, 4hf1:B, 4hf2:A, 4hf2:B
21 8eno:C 407 84 0.1230 0.0565 0.2738 9.7 1l5h:A
22 8ssz:B 384 50 0.0909 0.0443 0.3400 9.8 6cnj:B, 6cnj:C, 6cnj:E, 6cnk:C, 6cnk:E, 5kxi:B, 5kxi:E, 8st0:B, 8st2:C, 8st2:E, 8st3:B, 8st3:E, 8st4:B, 8st4:E, 6ur8:B, 6usf:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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