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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ
AAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKF
CETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKL
FCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPL
FMAVYKVCYEGQPVGEFIHCLQNHPEHM

The query sequence (length=348) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1x0x:A 350 348 1.0000 0.9943 1.0000 0.0 6e8y:A, 6e8z:A, 6e8z:B, 6e90:A, 6e90:B, 6e90:C, 6e90:D, 6pyp:A, 6pyp:B, 1wpq:A, 1wpq:B, 1x0v:A, 1x0v:B
2 2pla:A 343 343 0.7040 0.7143 0.7143 0.0 2pla:B
3 6iuy:A 585 339 0.4511 0.2684 0.4631 9.36e-90 6iuy:B
4 1z82:A 312 332 0.2902 0.3237 0.3042 9.12e-34 1z82:B
5 1n1e:A 349 337 0.2989 0.2980 0.3086 1.97e-30 1evz:A, 1jdj:A, 1m66:A, 1m67:A, 1n1e:B, 1n1g:A
6 1txg:A 335 356 0.2644 0.2746 0.2584 6.61e-09 1txg:B
7 3zk4:B 571 52 0.0603 0.0368 0.4038 1.9 3zk4:A, 3zk4:C
8 1zuw:C 262 23 0.0345 0.0458 0.5217 2.3 1zuw:A, 1zuw:B
9 5z20:F 336 47 0.0402 0.0417 0.2979 2.3 5z20:A, 5z20:B, 5z20:C, 5z20:D, 5z20:E
10 7yni:A 566 85 0.0805 0.0495 0.3294 2.6
11 7wmv:A 602 59 0.0632 0.0365 0.3729 3.1
12 7sla:A 585 59 0.0603 0.0359 0.3559 4.7 7sl8:A
13 4kqx:B 335 40 0.0431 0.0448 0.3750 4.8 4kqw:A, 4kqw:B, 4kqx:A
14 4wj3:M 589 75 0.0718 0.0424 0.3333 5.8 4wj3:N, 4wj3:O, 4wj3:P, 4wj4:A
15 3pyz:A 410 115 0.0833 0.0707 0.2522 7.4 3n2a:A, 3qcz:A
16 3dgb:A 371 80 0.0603 0.0566 0.2625 9.7 3ct2:A, 3ct2:B, 3fj4:A, 3fj4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218