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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASGLMCIGVTGHYDKTLGGIDKLAIYITPNAGSAPIDLKNAKLFLIYDGESHVLNYSTVTTATLGADDIFNSSAITDWSL
ADSSSYVVGVIQDADGSLSNGVINKGDIAVLLVNANAVFNKAIPTRSEVSGQFQPEFGAPAVIQFTTPAAYTQTVIELQH
HHHHH

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ya6:B 165 165 1.0000 1.0000 1.0000 2.96e-120 5ya6:A
2 7ofq:A 209 165 0.6000 0.4737 0.6000 1.76e-60 7ofq:C, 7ofq:E, 7ofq:G, 7ofq:I, 7ofq:K, 7ofq:M, 7ofq:O, 7ofq:Q, 7ofq:S, 7ofq:U, 7ofq:W, 7ofq:Y, 7ofq:a, 7ofq:c, 7ofq:e, 7ofq:g, 7ofq:i, 7ofq:k, 7ofq:m, 7ofq:o, 7ofq:q, 7ofq:s
3 7ofq:B 213 172 0.4545 0.3521 0.4360 7.62e-26 7ofq:D, 7ofq:F, 7ofq:H, 7ofq:J, 7ofq:L, 7ofq:N, 7ofq:P, 7ofq:R, 7ofq:T, 7ofq:V, 7ofq:X, 7ofq:Z, 7ofq:b, 7ofq:d, 7ofq:f, 7ofq:h, 7ofq:j, 7ofq:l, 7ofq:n, 7ofq:p, 7ofq:r
4 5ifp:A 968 89 0.1758 0.0300 0.3258 0.36 5ift:A, 5ihr:A, 5juv:A, 5mgc:A, 5mgd:A
5 6j4b:A 123 72 0.1091 0.1463 0.2500 1.9 6j4c:A, 6jtf:A
6 5ol2:F 378 62 0.1152 0.0503 0.3065 3.2 5ol2:C
7 3sy9:B 372 72 0.1091 0.0484 0.2500 5.9 3sy9:A, 3sy9:C, 3sy9:D
8 4b97:A 151 98 0.1576 0.1722 0.2653 6.4
9 4rs2:B 183 27 0.0727 0.0656 0.4444 6.6 4rs2:A
10 7apz:A 184 54 0.0909 0.0815 0.2778 7.4 6kvm:A
11 4uy7:A 327 48 0.0970 0.0489 0.3333 7.8 6fnq:A, 6fnq:B, 6fnr:A, 6fnr:B, 6fns:A, 6fns:B, 6fnt:A, 6fnt:B, 4pin:A, 4pin:B, 4pio:A, 4pio:B, 4pip:A, 4pip:B, 4pip:C, 4pip:D, 4uy5:A, 4uy6:A, 4uy7:B
12 3ii1:A 522 87 0.1273 0.0402 0.2414 10.0 3fw6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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