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BioLiP
>protein
ASGGGVPTDEEQATGLEREVMMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWVHKGETQ
RCPSCGTHYKLVSHQLA

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3abk:F 98 97 0.9381 0.9286 0.9381 2.24e-66 3abk:S, 3abl:F, 3abl:S, 3abm:F, 3abm:S, 3ag1:F, 3ag1:S, 3ag2:F, 3ag2:S, 3ag3:F, 3ag3:S, 3ag4:F, 3ag4:S, 3asn:F, 3asn:S, 3aso:F, 3aso:S, 5b1a:F, 5b1a:S, 5b1b:F, 5b1b:S, 5b3s:F, 5b3s:S, 7coh:F, 7coh:S, 7cp5:F, 7cp5:S, 8d4t:S, 7d5w:F, 7d5w:S, 7d5x:F, 7d5x:S, 7dgq:A5, 7dgr:A6, 7dgs:B2, 7dkf:F3, 2dyr:F, 2dyr:S, 2dys:F, 2dys:S, 2eij:F, 2eij:S, 2eik:F, 2eik:S, 2eil:F, 2eil:S, 2eim:F, 2eim:S, 2ein:F, 2ein:S, 7ev7:F, 7ev7:S, 8gbt:F, 8gbt:S, 8gcq:F, 8gcq:S, 5gup:Ap, 8gvm:F, 8gvm:S, 8h8r:F, 8h8r:S, 8h8s:F, 8h8s:S, 8ijn:F, 8ijn:S, 5iy5:F, 5iy5:S, 6j8m:F, 6j8m:S, 6juw:F, 6juw:S, 6jy3:F, 6jy4:F, 5luf:3, 6nkn:F, 6nkn:S, 6nmf:F, 6nmf:S, 6nmp:F, 6nmp:S, 1occ:F, 1occ:S, 1oco:F, 1oco:S, 1ocr:F, 1ocr:S, 1ocz:F, 1ocz:S, 2occ:F, 2occ:S, 7thu:F, 7thu:S, 7tie:F, 7tie:S, 7tih:F, 7tih:S, 7tii:F, 7tii:S, 8ugh:4F, 8ugi:4F, 8ugj:4F, 8ugj:8F, 8ugl:4F, 8ugn:4F, 8ugn:8F, 8ugr:4F, 8ugr:8F, 1v54:F, 1v54:S, 1v55:F, 1v55:S, 7vuw:F, 7vuw:S, 7vvr:F, 7vvr:S, 7w3e:F, 7w3e:S, 5w97:F, 5w97:f, 5wau:F, 5wau:f, 3wg7:F, 3wg7:S, 5x19:F, 5x19:S, 5x1b:F, 5x1b:S, 5x1f:F, 5x1f:S, 3x2q:F, 3x2q:S, 5xdq:F, 5xdq:S, 5xdx:F, 5xdx:S, 7xma:F, 7xma:S, 7xmb:F, 7xmb:S, 5xth:2, 5xti:2, 5xti:B2, 7y44:F, 7y44:S, 2y69:F, 2y69:S, 2ybb:Q, 7ypy:F, 7ypy:S, 5z84:F, 5z84:S, 5z85:F, 5z85:S, 5z86:F, 5z86:S, 5zco:F, 5zco:S, 5zcp:F, 5zcp:S, 5zcq:F, 5zcq:S, 2zxw:F, 2zxw:S
2 7o37:f 95 95 0.8557 0.8737 0.8737 2.23e-62 7o3c:f, 7o3e:f, 8pw5:s, 8pw5:f, 8pw6:s, 8pw7:s
3 8c8q:D 121 91 0.4124 0.3306 0.4396 1.94e-16 8q1b:d
4 7jro:e 94 81 0.3505 0.3617 0.4198 1.95e-16 7jrp:e
5 8dh6:d 121 93 0.3402 0.2727 0.3548 4.08e-11 6hu9:d, 6hu9:p, 6t0b:d, 6t0b:q, 6t15:d, 6ymx:d, 6ymy:d, 7z10:d
6 8b6h:DD 558 73 0.2680 0.0466 0.3562 0.007 8b6h:Dd, 8bqs:DD, 8bqs:Dd, 8gym:vb, 8gym:VB, 8gzu:29, 8gzu:84, 8gzu:vb, 8gzu:VB, 7w5z:5B, 7w5z:5b
7 7qv8:A 208 38 0.1753 0.0817 0.4474 0.46
8 3k2h:A 503 35 0.1546 0.0298 0.4286 0.65 3k2h:B, 3kjr:A, 3kjr:B, 3nrr:A, 3nrr:B
9 7ob9:A 1535 30 0.1031 0.0065 0.3333 0.84 7oba:A
10 7vbc:A 1477 30 0.1031 0.0068 0.3333 0.85 7vba:A, 7vbb:A
11 7obb:A 1510 30 0.1031 0.0066 0.3333 0.88
12 4cib:A 413 38 0.1443 0.0339 0.3684 2.6 4az0:A, 4az0:B, 4az3:A, 4az3:B, 4cia:A
13 5dap:A 288 61 0.1856 0.0625 0.2951 4.2 5daq:A, 5dav:A, 5daw:A, 5dax:A, 6eoz:A, 6jzm:B, 6k0e:B, 6k0f:B, 6k30:B, 6kd9:B, 6kd9:F, 5oa4:A, 5oa7:A, 5oa8:A, 7olk:A, 7oll:A, 7olm:A, 7olo:A, 7olp:A, 7olq:A, 7olr:A, 7olt:A, 5y7r:B, 5y7t:B
14 3zyj:B 326 57 0.1649 0.0491 0.2807 9.1 3zyj:D
15 3zgz:D 867 25 0.1031 0.0115 0.4000 10.0 2ajh:A, 2ajh:B, 2aji:A, 2aji:B, 4aq7:A, 4aq7:D, 4cqn:A, 4cqn:D, 5omw:A, 5omw:D, 5on2:A, 5on2:D, 5on3:A, 5on3:D, 5onh:A, 5onh:D, 3zgz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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