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BioLiP
>protein
ASGADALKALNKDNDDSLEIAEVIHAGATTFTAINPDGDTTLESGETKGRLTEKDWARANKDGDQTLEMDEWLKILRTRF
KRADANKDGKLTAAELDSKAGQGVLVMIMK

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dq2:A 110 110 1.0000 1.0000 1.0000 2.33e-75 8dq2:B, 8dq2:C, 8dq2:D, 8fnr:A, 8fnr:B, 8fnr:C, 8fnr:D
2 8fns:A 105 102 0.3273 0.3429 0.3529 6.60e-18
3 4n5x:A 155 86 0.2182 0.1548 0.2791 0.057 4zcu:A, 4zcu:B, 4zcu:C, 4zcv:A, 4zcv:B, 4zcv:C, 4zcv:D
4 4n5x:A 155 52 0.1455 0.1032 0.3077 7.8 4zcu:A, 4zcu:B, 4zcu:C, 4zcv:A, 4zcv:B, 4zcv:C, 4zcv:D
5 1h4b:A 84 17 0.1182 0.1548 0.7647 0.15
6 2scp:A 174 31 0.1091 0.0690 0.3871 0.15 2scp:B
7 2ggz:A 165 66 0.1727 0.1152 0.2879 0.83 2ggz:B
8 4rlc:A 135 33 0.1182 0.0963 0.3939 1.3
9 2l1w:A 149 53 0.1364 0.1007 0.2830 1.5 2ksz:A, 2roa:A, 2rob:A
10 7evv:A 489 67 0.1636 0.0368 0.2687 1.5 6a88:A, 6a88:B, 6a88:C, 6a88:D, 7evu:A, 7evu:B, 7f9p:A, 7f9q:A, 7f9q:B, 7f9r:A, 7f9s:A, 7f9t:A, 7f9t:B, 7f9u:A, 7f9u:B, 7f9u:C, 7f9u:D, 7f9v:A, 7f9v:B, 7fak:A, 7fal:A, 7fal:B, 7fam:A, 7fan:A, 7v8j:A, 7v8j:B, 7v8k:A, 7v8k:B, 7vc1:A, 7vc2:A, 7vc2:B, 7vc3:A, 7vc5:A, 5xig:A, 5xig:B, 5xig:C, 5xig:D, 5xih:A, 5xih:B, 5xih:C, 5xih:D, 5xii:A, 5xii:B, 5xii:C, 5xii:D, 5xij:A, 5xij:B, 5xij:C, 5xij:D, 5xik:A, 5xik:B, 5xik:C, 5xik:D, 5xiq:A, 5xiq:B, 5xiq:C, 5xiq:D
11 2m28:A 72 25 0.1000 0.1528 0.4400 1.7
12 2opo:C 85 17 0.0909 0.1176 0.5882 3.0 2opo:A, 2opo:B, 2opo:D
13 3dd4:A 214 89 0.2545 0.1308 0.3146 3.1
14 3a8r:B 167 21 0.1091 0.0719 0.5714 3.7 3a8r:A
15 6iqd:A 336 26 0.1000 0.0327 0.4231 3.8 6iqd:B, 6iqd:C, 6iqd:D, 6iqd:E, 6iqd:F, 6iqd:G, 6iqd:H
16 2lhi:A 176 48 0.1364 0.0852 0.3125 3.9 1f55:A, 2lhh:A, 6oqq:B, 6oqq:D
17 5ukh:A 321 39 0.1273 0.0436 0.3590 4.0
18 2qsc:H 211 43 0.1364 0.0711 0.3488 4.6
19 2lvj:A 77 17 0.0909 0.1299 0.5882 5.4 1k9u:A, 1k9u:B, 2lvk:A, 5otj:D, 5otj:C
20 3orc:A 65 32 0.1273 0.2154 0.4375 5.9 6cro:A
21 2gn4:A 329 38 0.1182 0.0395 0.3421 6.6 2gn4:B, 2gn6:A, 2gn6:B, 2gn8:A, 2gn8:B, 2gn9:A, 2gn9:B, 2gna:A, 2gna:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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