Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ASGADALKALDSLEIAEVIHAGATTFTAINPDGDTTLESGETKGRLTEKDWARANKDGDQTLEMDEWLKILRTRFKRADA
NKDGKLTAAELDSKAGQGVLVMIMK

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dq2:A 110 110 1.0000 0.9545 0.9545 3.97e-69 8dq2:B, 8dq2:C, 8dq2:D, 8fnr:A, 8fnr:B, 8fnr:C, 8fnr:D
2 8fns:A 105 92 0.3143 0.3143 0.3587 2.80e-16
3 4n5x:A 155 86 0.2286 0.1548 0.2791 0.037 4zcu:A, 4zcu:B, 4zcu:C, 4zcv:A, 4zcv:B, 4zcv:C, 4zcv:D
4 1h4b:A 84 17 0.1238 0.1548 0.7647 0.13
5 2scp:A 174 31 0.1143 0.0690 0.3871 0.14 2scp:B
6 2ggz:A 165 66 0.1810 0.1152 0.2879 0.63 2ggz:B
7 7evv:A 489 71 0.1810 0.0389 0.2676 0.80 6a88:A, 6a88:B, 6a88:C, 6a88:D, 7evu:A, 7evu:B, 7f9p:A, 7f9q:A, 7f9q:B, 7f9r:A, 7f9s:A, 7f9t:A, 7f9t:B, 7f9u:A, 7f9u:B, 7f9u:C, 7f9u:D, 7f9v:A, 7f9v:B, 7fak:A, 7fal:A, 7fal:B, 7fam:A, 7fan:A, 7v8j:A, 7v8j:B, 7v8k:A, 7v8k:B, 7vc1:A, 7vc2:A, 7vc2:B, 7vc3:A, 7vc5:A, 5xig:A, 5xig:B, 5xig:C, 5xig:D, 5xih:A, 5xih:B, 5xih:C, 5xih:D, 5xii:A, 5xii:B, 5xii:C, 5xii:D, 5xij:A, 5xij:B, 5xij:C, 5xij:D, 5xik:A, 5xik:B, 5xik:C, 5xik:D, 5xiq:A, 5xiq:B, 5xiq:C, 5xiq:D
8 8tao:B 771 65 0.1810 0.0246 0.2923 1.2 7fd8:A, 7fd8:B, 7fd9:A, 7fd9:B, 3lmk:A, 3lmk:B, 8t8m:A
9 6n51:B 793 65 0.1810 0.0240 0.2923 1.2 6n4x:B, 6n4y:C, 6n50:A, 6n50:B, 6n50:C, 6n51:A, 8t6j:B, 8t6j:A, 8t7h:A, 8t7h:B, 8t8m:B, 8tao:A
10 2l1w:A 149 53 0.1429 0.1007 0.2830 1.4 2ksz:A, 2roa:A, 2rob:A
11 4rlc:A 135 34 0.1238 0.0963 0.3824 1.4
12 2m28:A 72 25 0.1048 0.1528 0.4400 1.6
13 3dd4:A 214 89 0.2667 0.1308 0.3146 2.4
14 2opo:C 85 17 0.0952 0.1176 0.5882 2.5 2opo:A, 2opo:B, 2opo:D
15 3a8r:B 167 21 0.1143 0.0719 0.5714 3.0 3a8r:A
16 2qsc:H 211 43 0.1429 0.0711 0.3488 3.2
17 2lhi:A 176 48 0.1429 0.0852 0.3125 3.5 1f55:A, 2lhh:A, 6oqq:B, 6oqq:D
18 2lvj:A 77 17 0.0952 0.1299 0.5882 4.7 1k9u:A, 1k9u:B, 2lvk:A, 5otj:D, 5otj:C
19 3orc:A 65 32 0.1333 0.2154 0.4375 5.4 6cro:A
20 4nqg:A 197 49 0.1429 0.0761 0.3061 7.2 4nqg:B
21 6yeu:A 107 31 0.1143 0.1121 0.3871 7.5 6yig:A
22 4e84:A 313 39 0.1238 0.0415 0.3333 9.5 4e84:B, 4e8w:A, 4e8w:B, 4e8y:A, 4e8y:B, 4e8z:A, 4e8z:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218