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BioLiP
>protein
ASFLSSIFVPVIGWVVPIATFSFLFLYIEREDV

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6k61:I 34 33 1.0000 0.9706 1.0000 4.92e-17 6jeo:aI, 6jeo:bI, 6jeo:cI, 6jeo:dI, 6k61:i, 6tcl:I1, 6tcl:I2, 6tcl:I, 6tcl:II, 7y3f:I
2 7yca:I 35 33 0.5758 0.5429 0.5758 4.71e-07
3 8htu:I 34 32 0.5455 0.5294 0.5625 1.45e-06 7ksq:I, 7kux:I, 6l35:I, 7xqp:I
4 7a4p:I 35 33 0.4848 0.4571 0.4848 3.01e-06 6zzx:I, 6zzy:I
5 7qco:I 39 32 0.5152 0.4359 0.5312 3.19e-06 7qco:P, 7qco:p, 7qco:i
6 4fe1:I 38 31 0.5152 0.4474 0.5484 5.03e-06 7fix:I1, 7fix:I2, 7fix:I3, 1jb0:I, 6k33:aI, 6k33:bI, 6k33:cI, 6lu1:I, 7m75:I, 7m76:I, 7m78:I, 3pcq:I, 6pfy:I, 6pfy:R, 6pfy:e, 6pgk:I, 6pgk:R, 6pgk:e, 6tra:I, 6trc:I, 6trc:7, 6trc:i, 6trd:I, 6trd:7, 6trd:i, 5zf0:I1, 5zf0:I2, 5zf0:I3, 5zf0:I4, 5zf0:I5, 5zf0:I6
7 6l4u:I 35 33 0.4242 0.4000 0.4242 1.42e-05
8 8wey:I 32 30 0.4545 0.4688 0.5000 3.02e-05 7blz:I, 5zgb:I, 5zgh:I
9 8am5:i 40 32 0.4242 0.3500 0.4375 3.49e-05 8asl:i, 8asp:i, 6hqb:I, 4l6v:I, 4l6v:i, 4l6v:9, 6nwa:I, 6nwa:i, 6nwa:R, 5oy0:I, 5oy0:i, 5oy0:h, 7umh:I, 7umh:R, 7umh:i, 6uzv:I, 6uzv:i, 6uzv:h
10 6kif:I 38 31 0.4848 0.4211 0.5161 6.29e-05 6kif:S, 6kif:k, 6kig:I, 6kig:S, 6kig:k
11 6vpv:I 38 31 0.4848 0.4211 0.5161 6.43e-05 6vpv:i, 6vpv:7
12 8wm6:I 34 32 0.4242 0.4118 0.4375 1.08e-04 8wmj:I, 8wmv:I, 8wmw:I
13 6igz:I 32 30 0.4545 0.4688 0.5000 2.57e-04
14 7y7b:I 33 31 0.4545 0.4545 0.4839 3.71e-04 7y8a:I
15 8bcv:I 33 30 0.3939 0.3939 0.4333 6.78e-04 8bcw:I, 7ew6:I, 7ewk:I, 7f9o:I, 7f9o:l, 5zji:I
16 7dz7:I 42 30 0.4242 0.3333 0.4667 0.001 7bgi:I, 7blx:I, 8cmo:I, 7d0j:I, 7dz8:I, 6ijj:I, 6ijo:I, 6jo5:I, 6jo6:I, 7r3k:I, 7zq9:I, 7zq9:I2, 7zqc:I, 7zqd:I, 7zqd:I2
17 7y5e:IN 31 30 0.3636 0.3871 0.4000 0.001 7y5e:I2, 7y7a:I7, 7y7a:Io
18 7dr0:I 30 29 0.3939 0.4333 0.4483 0.002 7dr1:I, 7dr2:aI, 7dr2:bI, 7dr2:cI, 7dr2:dI
19 7wfd:AI 33 29 0.3939 0.3939 0.4483 0.003 8j6z:I, 8j7a:I, 8j7b:I, 7wfe:BI, 7wg5:AI, 7wg5:BI
20 6kmw:aI 38 31 0.3636 0.3158 0.3871 0.003 6kmw:cI, 6kmw:bI
21 7s3d:I 42 31 0.3939 0.3095 0.4194 0.004 7s3d:i, 7s3d:R
22 6kmx:aI 41 31 0.3939 0.3171 0.4194 0.007 6kmx:cI, 6kmx:bI
23 7lx0:R 42 31 0.3636 0.2857 0.3871 0.007 7lx0:I, 7lx0:i, 6pnj:I, 6pnj:R, 6pnj:i
24 6ly5:i 33 28 0.3333 0.3333 0.3929 0.011 7dkz:I, 5l8r:I, 3lw5:I, 2o01:I, 2wsc:I, 2wse:I, 2wsf:I, 4xk8:i, 6yac:I, 6yez:I, 6zoo:I, 6zxs:I
25 6sl5:I 39 26 0.2727 0.2308 0.3462 1.1
26 9ash:J 311 16 0.2121 0.0225 0.4375 2.4 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
27 6qzh:A 744 18 0.2727 0.0121 0.5000 4.8 7a54:A, 7a54:B, 7a5x:A, 7a5x:B, 3h72:A, 3h72:B, 3h73:A, 3h73:B, 5kky:A, 5kky:B, 2vvz:A, 2vvz:B, 2ya5:A, 2ya5:B, 2ya6:A, 2ya6:B, 2ya7:A, 2ya7:B, 2ya7:C, 2ya7:D, 2ya8:A, 2ya8:B
28 8uy2:D 557 19 0.3030 0.0180 0.5263 9.1 8uy2:A, 8uy2:B, 8uy2:C
29 8uy1:A 598 19 0.3030 0.0167 0.5263 9.1 8uy1:D, 8uy1:B, 8uy1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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