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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASDVTVNVSAEKQVIRGFGGMNHPAWAGDLTAAQRETAFGNGQNQLGFSILRIHVDENRNNWYKEVETAKSAVKHGAIVF
ASPWNPPSDMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMKNNGVNLYAISVQNEPDYAHEWTWWTPQEILRFMRE
NAGSINARVIAPESFQYLKNLSDPILNDPQALANMDILGTHLYGTQVSQFPYPLFKQKGAGKDLWMTEVYYPNSDTNSAD
RWPEALDVSQHIHNAMVEGDFQAYVWWYIRRSYGPMKEDGTISKRGYNMAHFSKFVRPGYVRIDATKNPNANVYVSAYKG
DNKVVIVAINKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQPGTNLTVSGNHFWAHLPAQSVTTFVVN

The query sequence (length=389) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3kl0:A 397 389 1.0000 0.9798 1.0000 0.0 3kl3:A, 3kl3:B, 3kl5:A, 3kl5:B, 3kl5:C
2 4qaw:A 537 390 0.8149 0.5903 0.8128 0.0 4qaw:B, 4qaw:C, 4qaw:D, 4qaw:E, 4qaw:F, 4qaw:G, 4qaw:H, 4qb1:A, 4qb2:A, 4qb6:A
3 4uqa:A 391 388 0.7069 0.7033 0.7088 0.0 5a6l:A, 5a6m:A, 4ckq:A, 4uqc:A
4 2y24:A 383 389 0.4036 0.4099 0.4036 4.74e-92
5 7n6o:A 433 331 0.2931 0.2633 0.3444 7.17e-45 7n6o:B
6 6m5z:A 433 359 0.2442 0.2194 0.2646 8.27e-14 6m5z:B
7 6krn:A 456 188 0.1414 0.1206 0.2926 2.12e-12
8 8idp:A 446 349 0.2237 0.1951 0.2493 1.07e-09 8idp:C, 8idp:B, 8idp:D, 8idq:A, 8idq:B, 8idq:C, 8idq:D
9 2wnw:B 445 287 0.1877 0.1640 0.2544 2.79e-06 2wnw:A
10 8cbc:A 455 344 0.1954 0.1670 0.2209 1.89e-05 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B
11 5ngl:B 454 370 0.2108 0.1806 0.2216 3.09e-04 5ngl:A, 5ngl:C
12 9fa6:A 501 299 0.1491 0.1158 0.1940 0.010 8awk:AAA, 8awr:AAA, 8ax3:A, 8ax3:B, 9f9z:A, 9fa3:A, 9fad:A, 9fal:A, 9fay:A, 9faz:A, 9fb2:A, 9fdi:A, 3gxf:B, 3gxf:D, 5lvx:C, 5lvx:B, 5lvx:A, 5lvx:D, 6moz:A, 2nsx:A, 2nsx:B, 2nsx:C, 2nsx:D, 2nt0:A, 2nt0:B, 2nt0:C, 2nt0:D, 7nwv:AAA, 7nwv:BBB, 8p3e:B, 8p41:A, 8p41:B, 6q1n:A, 6q1n:B, 6q1p:A, 6q1p:B, 6q6k:A, 6q6k:B, 6q6l:A, 6q6l:B, 6q6n:A, 6q6n:B, 3rik:B, 3rik:D, 3ril:A, 3ril:B, 3ril:C, 3ril:D, 6t13:B, 6t13:C, 6t13:A, 6t13:D, 6tjq:BBB, 6tn1:AAA, 2v3d:A, 2v3d:B, 2v3e:A, 2v3e:B, 2vt0:A, 2vt0:B, 2wcg:A, 2wcg:B, 2xwd:A, 2xwd:B, 2xwe:A, 2xwe:B, 1y7v:A, 1y7v:B, 6ytp:AAA, 6ytp:BBB, 6ytr:AAA, 6ytr:BBB, 6yut:AAA, 6yut:BBB, 6yv3:AAA, 6yv3:BBB, 6z39:AAA, 6z39:BBB, 6z3i:BBB
13 5nxb:A 644 189 0.1054 0.0637 0.2169 0.052 4ccc:A, 4ccd:A, 4cce:A, 5nxb:B, 4ufh:A, 4ufi:A, 4ufj:A, 4ufk:A, 4ufl:A, 4ufm:A, 6y6s:A, 6y6t:A, 3zr5:A, 3zr6:A
14 7xi3:A 287 105 0.0643 0.0871 0.2381 0.56
15 1qab:E 180 49 0.0411 0.0889 0.3265 0.96 1qab:F
16 1fem:A 176 49 0.0411 0.0909 0.3265 1.0 1aqb:A, 1brp:A, 3bsz:E, 3bsz:F, 1erb:A, 1fel:A, 1fen:A, 3fmz:A, 3fmz:B, 1hbp:A, 1kt3:A, 1kt4:A, 1kt5:A, 1kt6:A, 1kt7:A, 5nu7:A, 5nua:A, 5nub:A, 4o9s:A, 4o9s:B, 4psq:B, 4psq:A, 6qba:A, 1rbp:A, 1rlb:E, 1rlb:F, 2wr6:A
17 3a3u:A 270 59 0.0463 0.0667 0.3051 2.9 2czl:A
18 1nvm:B 312 43 0.0360 0.0449 0.3256 3.4 1nvm:D, 1nvm:H
19 1gpl:A 432 93 0.0617 0.0556 0.2581 4.0
20 1hpl:A 449 68 0.0488 0.0423 0.2794 4.5 1hpl:B
21 4dnj:A 399 75 0.0488 0.0476 0.2533 5.3 2fr7:A
22 8ij1:D 627 66 0.0411 0.0255 0.2424 5.9 8ij1:I, 8je1:I, 8je2:D, 7roy:A, 7roy:C, 8wqa:B, 8wqa:D, 8wqb:J, 8wqd:D, 8wqe:B, 8wqf:J, 8wqh:D, 8wqh:H, 8wqi:D
23 1iiu:A 174 49 0.0360 0.0805 0.2857 6.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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