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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASAWPEEKNYHQPAILNSSALRQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQ
TPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLSLKPDLSLQLIFF
DGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHEL
HELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLEY
LHL

The query sequence (length=323) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yi1:A 329 327 0.9938 0.9757 0.9817 0.0 2afm:A, 2afm:B, 2afo:A, 2afo:B, 2afs:A, 2afs:B, 2afu:A, 2afu:B, 2afw:A, 2afw:B, 2afx:A, 2afx:B, 2afz:A, 2afz:B, 7cm0:A, 7cm0:B, 7cm0:C, 7cm0:D, 7coz:A, 7coz:B, 7coz:C, 7cp0:A, 7cp0:B, 7cp0:C, 7d8e:A, 7d8e:B, 7d8e:C, 9fxh:A, 9fxh:B, 9fxh:C, 9fxi:A, 9fxi:B, 9fxi:C, 9fxj:A, 9fxj:B, 9fxj:C, 6gbx:A, 6gbx:B, 6gbx:C, 8hy3:A, 3pbb:A, 3pbb:B, 3pbe:A, 3pbe:B, 3si0:A, 8xgb:B, 8xgt:B, 8xgt:A, 8xgt:C, 8xgt:D, 8xgt:E, 8xgt:F, 8xgt:G, 8xgt:H, 8xgt:I, 8xgt:J, 8xgt:K, 8xgt:L, 8xgy:B, 8xgy:E, 8xgy:A, 8xgy:D, 8xgy:C, 8xgy:K, 8xgy:F, 8xgy:I, 8xgy:G, 8xgy:H, 8xgy:J, 8xgy:L, 6yi1:B, 6yjy:A, 6yjy:B, 4yu9:A, 4yu9:B, 4yu9:C, 4ywy:A, 4ywy:B, 4ywy:C, 2zed:A, 2zed:B, 2zee:A, 2zee:B, 2zef:A, 2zef:B, 2zeg:A, 2zeg:B, 2zeh:A, 2zeh:B, 2zel:A, 2zel:B, 2zem:A, 2zem:B, 2zen:A, 2zen:B, 2zeo:A, 2zeo:B, 2zep:A, 2zep:B
2 3si1:A 323 323 0.8576 0.8576 0.8576 0.0 3si2:A
3 3pb6:X 313 311 0.4985 0.5144 0.5177 7.30e-100 3pb4:X, 3pb7:X, 3pb8:X, 3pb9:X, 8xfv:X, 8xfv:A, 8xfv:B, 8xfv:C, 8xfv:D, 8xfv:E, 8xfv:F, 8xfv:G, 8xfv:H, 8xfv:I, 8xfv:J, 8xga:A, 8xga:B, 8xga:C, 8xga:D, 8xga:E, 8xga:F, 8xga:G, 8xga:H, 8xga:I, 8xga:J, 8xga:K
4 4fai:B 305 287 0.4458 0.4721 0.5017 5.52e-86 4fai:A, 4fbe:A, 4fbe:B
5 7d21:A 328 299 0.4551 0.4482 0.4916 1.19e-85 7d1h:A, 7d1n:A, 7d1y:A, 7d2d:A, 7d2i:A, 7d2j:A, 4mhn:A, 4mhy:A, 4mhz:A
6 4f9v:A 307 304 0.3963 0.4169 0.4211 1.71e-71 4f9u:B, 4f9u:A, 4f9v:B, 4fwu:A
7 7d17:A 321 294 0.3715 0.3738 0.4082 2.65e-57
8 7d18:A 293 271 0.2601 0.2867 0.3100 2.14e-25
9 3tc8:A 293 299 0.2260 0.2491 0.2441 8.86e-16 3tc8:B
10 6qro:A 291 247 0.2167 0.2405 0.2834 2.87e-15 6qro:B, 6qro:C, 6qro:D
11 7cje:C 289 245 0.1827 0.2042 0.2408 4.84e-14 7cje:A, 7cjg:A, 7cjg:B, 6qql:A, 6qql:B
12 7d1d:A 294 256 0.1950 0.2143 0.2461 9.01e-10 7d1e:A, 4fuu:A
13 2ek8:A 412 235 0.1703 0.1335 0.2340 1.47e-07 2ek9:A, 5ib9:A
14 7d1b:A 302 285 0.1858 0.1987 0.2105 1.55e-07
15 6hc6:C 408 101 0.0960 0.0760 0.3069 0.002 6hc6:A, 6hc6:B, 6hc7:A, 6hc7:B, 6hc7:C
16 1f2o:A 277 293 0.1920 0.2238 0.2116 0.087 1cp7:A, 1f2p:A, 1qq9:A, 1tf8:A, 1tf9:A, 1tkf:A, 1tkh:A, 1tkj:A, 1xbu:A, 1xjo:A
17 6m13:b 688 61 0.0681 0.0320 0.3607 0.21 7dsy:a, 7dsy:b, 7dts:a, 7dts:b, 7elw:a, 7elw:b, 6m11:a, 6m11:b, 6m12:a, 6m12:b, 6m13:a, 4o1o:A, 4o1o:B, 4o1o:C, 4o1o:D, 4o1p:A, 4o1p:B, 4o1p:C, 4o1p:D
18 4fn5:A 670 64 0.0557 0.0269 0.2812 0.67
19 3fwn:A 467 85 0.0681 0.0471 0.2588 1.6 3fwn:B, 2zya:A, 2zya:B, 2zyd:A, 2zyd:B
20 3a2k:A 462 45 0.0464 0.0325 0.3333 6.0 3a2k:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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