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BioLiP
>protein
ASATRVIQLLRNWASGRDLQAKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRREAMPPSIVMSSQKTEKKAVT
PAPPIKRWELSKDQPYL

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vb7:I 97 97 1.0000 1.0000 1.0000 3.86e-68 5lnk:h, 6q9d:A7, 7vbn:I, 7vbz:I, 7vwj:I, 7vxp:I, 7vxu:I, 7vy8:I, 7vya:I, 7vyf:I, 7vyh:I, 7vyn:I, 7vz1:I, 5xtb:I
2 3qg6:B 209 37 0.1237 0.0574 0.3243 0.11 3qg6:H
3 5eoc:J 214 47 0.1753 0.0794 0.3617 1.8 5eoc:H
4 5fzo:A 339 32 0.1031 0.0295 0.3125 3.5 5fzo:B, 2ypd:A, 2ypd:B
5 1pp9:O 424 19 0.1031 0.0236 0.5263 3.9 2a06:B, 4d6t:B, 4d6t:O, 4d6u:B, 4d6u:O, 7dgq:l, 7dgq:x, 7dgr:l, 7dgr:x, 7dgs:l, 7dgs:x, 6fo0:O, 6fo0:B, 6fo2:O, 6fo2:B, 1pp9:B, 1ppj:O, 1ppj:B, 6qbx:a2, 6qbx:a4, 6qc3:a2, 6qc3:a4, 7tz6:B, 7tz6:O
6 5tkk:H 213 37 0.1340 0.0610 0.3514 4.4
7 1fl6:H 219 40 0.1443 0.0639 0.3500 4.6 1fl6:B
8 8szq:A 861 73 0.1856 0.0209 0.2466 5.4 3llm:A, 3llm:B, 8szp:A, 8szp:B, 8szr:A, 8szs:A
9 6zxd:k 430 76 0.2165 0.0488 0.2763 5.5 6zxe:k, 6zxf:k, 6zxg:k
10 2e18:A 256 33 0.1237 0.0469 0.3636 8.7 2e18:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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