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BioLiP
>protein
ASATEMIGYAWAMVVVIVGATIGIKLFKKFTSKAS

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8b3p:LLL 46 35 1.0000 0.7609 1.0000 2.00e-18 8b3o:KKK, 8b3o:LLL, 8b3o:MMM, 8b3o:NNN, 8b3o:OOO, 8b3p:NNN, 8b3p:OOO, 8ixl:A, 8ixl:N, 8ixl:V, 8ixl:DA, 8ixl:Z, 8jww:A, 8jww:N, 8jww:V, 8jww:DA, 8jww:Z
2 7e9y:A 563 25 0.2571 0.0160 0.3600 1.9
3 2zzv:A 330 25 0.2571 0.0273 0.3600 3.7 2zzv:B, 2zzw:A, 2zzw:B, 2zzx:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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