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BioLiP
>protein
ARRKRTTFNKTQLEILVKSFNKDPYPGIGVREHLASLIQIPESRIQVWFQNRRARQ

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ejo:A 56 56 1.0000 1.0000 1.0000 9.63e-37 8ejo:B, 8ejp:A, 8ejp:B
2 6e8c:A 135 56 0.5536 0.2296 0.5536 7.71e-17 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
3 6e8c:A 135 49 0.4643 0.1926 0.5306 6.46e-14 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
4 1fjl:A 65 54 0.5357 0.4615 0.5556 4.30e-16 1fjl:B, 1fjl:C
5 3a01:F 61 54 0.5536 0.5082 0.5741 1.09e-15 3a01:B, 3lnq:A
6 3cmy:A 60 54 0.5179 0.4833 0.5370 5.18e-15
7 8osb:E 62 53 0.5179 0.4677 0.5472 1.68e-14
8 9b8u:B 66 50 0.4821 0.4091 0.5400 9.08e-14 9b8u:A, 9b8u:C, 9b8u:D
9 2lkx:A 68 54 0.4107 0.3382 0.4259 1.03e-11
10 5hod:A 61 56 0.4464 0.4098 0.4464 9.81e-11 5hod:D
11 1jgg:A 57 53 0.4464 0.4386 0.4717 2.30e-09 1jgg:B
12 2me6:A 71 55 0.3750 0.2958 0.3818 4.66e-09
13 1ig7:A 58 54 0.3571 0.3448 0.3704 1.82e-08
14 1nk2:P 77 52 0.3750 0.2727 0.4038 6.20e-08 1nk3:P
15 8pna:A 67 54 0.3214 0.2687 0.3333 6.85e-08 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
16 1lfu:P 82 58 0.4464 0.3049 0.4310 2.02e-07 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
17 1b72:A 68 52 0.3393 0.2794 0.3654 2.35e-07
18 8eml:A 58 54 0.3393 0.3276 0.3519 7.20e-07 8eml:B
19 4rdu:D 62 54 0.3036 0.2742 0.3148 8.47e-07 4rdu:A, 4xrs:I, 4xrs:G
20 3a01:A 78 51 0.3214 0.2308 0.3529 1.70e-06 3a01:E
21 6m3d:C 108 51 0.3393 0.1759 0.3725 2.41e-06 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
22 6m3d:C 108 55 0.3571 0.1852 0.3636 2.68e-06 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
23 3rkq:A 58 52 0.3036 0.2931 0.3269 2.45e-06 3rkq:B
24 2h1k:B 60 54 0.3571 0.3333 0.3704 7.63e-06 2h1k:A
25 4qtr:C 57 51 0.3214 0.3158 0.3529 2.44e-05 4qtr:A, 4qtr:B, 4qtr:D
26 5zjr:A 64 55 0.3571 0.3125 0.3636 3.24e-05 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
27 4rbo:A 55 50 0.2500 0.2545 0.2800 3.91e-05 4rbo:D
28 2ld5:A 67 56 0.2679 0.2239 0.2679 7.80e-05
29 6es3:K 72 52 0.3036 0.2361 0.3269 9.08e-05 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
30 1puf:A 77 55 0.3393 0.2468 0.3455 1.04e-04 2lp0:A
31 5eea:G 63 55 0.2857 0.2540 0.2909 1.43e-04 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
32 8ik5:C 67 54 0.3571 0.2985 0.3704 3.39e-04 8ike:C, 8ilw:C
33 2r5z:A 75 53 0.3214 0.2400 0.3396 4.43e-04 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
34 4uus:A 67 51 0.3036 0.2537 0.3333 4.54e-04 4uus:E
35 1zq3:P 68 55 0.3036 0.2500 0.3091 5.05e-04
36 5flv:M 229 48 0.2679 0.0655 0.3125 5.30e-04 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
37 4cyc:A 66 51 0.3036 0.2576 0.3333 0.001 1b8i:A
38 1ahd:P 68 54 0.3214 0.2647 0.3333 0.001
39 3d1n:I 150 52 0.3036 0.1133 0.3269 0.001 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
40 4egc:A 539 58 0.3214 0.0334 0.3103 0.006
41 3l1p:A 147 54 0.3036 0.1156 0.3148 0.009 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
42 8bx1:A 127 36 0.2143 0.0945 0.3333 0.042
43 7xrc:C 134 53 0.3036 0.1269 0.3208 0.048 2xsd:C
44 4j19:A 77 64 0.3393 0.2468 0.2969 0.061 4j19:B
45 8g8e:X 140 54 0.2857 0.1143 0.2963 0.16 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 1gt0:C 137 55 0.3036 0.1241 0.3091 0.18 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
47 5wc9:A 136 54 0.2500 0.1029 0.2593 0.52 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
48 5y3m:A 738 33 0.2321 0.0176 0.3939 0.61 3wpe:A, 5y3m:B
49 3wpd:A 752 33 0.2143 0.0160 0.3636 3.7 3wpc:A, 3wpc:B, 5y3j:A, 5y3j:B, 5y3k:A, 5y3k:B, 5y3l:A, 5y3l:B
50 7lgm:A 719 38 0.1964 0.0153 0.2895 3.9 7lgm:B
51 8ei2:A 358 24 0.1786 0.0279 0.4167 5.1
52 8bam:A 525 26 0.1964 0.0210 0.4231 7.5 8bam:B, 8bap:A, 8bap:B, 8bap:C, 8bap:D, 8bap:E, 8bap:F, 8bap:G, 8bap:H, 8bap:I, 8bap:J, 8bap:K, 8bap:L, 8bap:M, 8bap:N, 8bap:O, 8bap:P, 5fxd:A, 5fxd:B, 5fxe:A, 5fxe:B, 5fxf:A, 5fxf:B, 5fxp:A, 5fxp:B, 7ywu:A, 7ywu:B, 7ywu:C, 7ywu:D, 7ywu:E, 7ywu:F, 7ywu:G, 7ywu:H, 7ywv:A, 7ywv:B, 7ywv:C, 7ywv:D, 7ywv:E, 7ywv:F, 7ywv:G, 7ywv:H
53 1wj2:A 71 31 0.1607 0.1268 0.2903 8.0 2lex:A
54 6il3:A 310 21 0.1786 0.0323 0.4762 9.1 6jqr:A, 4rt7:A, 5x02:A, 4xuf:A, 4xuf:B
55 3r8x:A 309 42 0.2500 0.0453 0.3333 9.2
56 6igz:3 226 20 0.1964 0.0487 0.5500 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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