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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARPTVFRWTGGGKEVYLSGSFNNWSKLPMTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK
KTDFEVF

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7myj:D 187 87 0.9770 0.4545 0.9770 8.33e-61 6b1u:B, 6b1u:D, 8bik:B, 8bik:E, 6c9f:B, 6c9g:B, 6c9j:B, 4cfe:B, 4cfe:D, 4cff:B, 4cff:D, 5ezv:B, 5ezv:D, 5iso:B, 5iso:D, 7myj:B, 4yef:A, 4yef:B, 4yef:C, 4yef:D, 4yef:E, 4yef:F, 4yef:G, 1z0m:A, 1z0m:B, 1z0m:C, 1z0n:A, 1z0n:B, 1z0n:C, 4zhx:B, 4zhx:D
2 6c9h:B 168 87 0.9655 0.5000 0.9655 2.47e-60 6e4t:B, 6e4u:B, 6e4w:B, 5kq5:B, 4qfr:B, 4qfs:B, 5t5t:B, 5ufu:B
3 6b2e:B 193 88 0.8046 0.3627 0.7955 1.72e-50 4cfh:B, 4rer:B, 4yee:A, 4yee:G, 4yee:B, 4yee:C, 4yee:D, 4yee:N, 4yee:E, 4yee:F, 4yee:H, 4yee:I, 4yee:J, 4yee:K, 4yee:L, 4yee:M, 4yee:O, 4yee:P, 4yee:Q, 4yee:R
4 4pyh:A 293 73 0.2989 0.0887 0.3562 2.34e-08
5 8dl1:A 713 51 0.2069 0.0252 0.3529 0.067 8dge:A, 8dge:B, 8dge:C, 8dge:D, 8dl1:B, 8dl1:C, 8dl1:D, 8dl2:A, 8dl2:B, 8dl2:C, 8dl2:D
6 2cdq:A 470 15 0.1149 0.0213 0.6667 0.92 2cdq:B
7 7esn:A 435 31 0.1379 0.0276 0.3871 1.4 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
8 5kdi:A 211 49 0.1839 0.0758 0.3265 2.4 5kdi:B
9 8xx9:A 620 65 0.2069 0.0290 0.2769 2.7 8xxa:A
10 7ucw:B 281 17 0.1149 0.0356 0.5882 3.1 7ucw:A, 7ucw:C, 7ucw:D
11 3vu2:A 692 34 0.1264 0.0159 0.3235 3.6 7ml5:A, 3vu2:B
12 7dwx:A 605 31 0.1494 0.0215 0.4194 4.1 7dwx:C, 8i92:B, 8i92:D, 8i93:B, 8i93:D, 6m17:A, 6m17:C, 8wby:A, 8wby:D, 8wbz:A, 8wbz:D
13 5clt:A 646 18 0.0920 0.0124 0.4444 4.4 5clt:B, 5clt:C, 5clw:A, 5clw:C, 5clw:B
14 5avp:A 240 22 0.1149 0.0417 0.4545 5.3 5avp:B, 5avp:C, 5avp:D
15 6e0l:A 292 18 0.1034 0.0308 0.5000 6.0
16 8p23:B 715 22 0.1149 0.0140 0.4545 6.8 8p23:A, 8p27:A, 8p27:B, 8p28:A, 8p28:B, 8p28:C, 8p28:D, 8p2c:A, 8p2c:B, 8p2c:C, 8p2c:D, 8p2d:A, 8p2d:B, 8p2s:A, 8p2s:B, 8p39:A, 8p39:B
17 6r4v:C 294 45 0.1724 0.0510 0.3333 8.3 6g31:A, 6g31:B, 6g31:C, 6g31:D, 6g31:F, 6g31:G, 6g31:H, 6g31:I, 6g31:J, 6g31:K, 6g31:L, 2q80:A, 2q80:B, 2q80:C, 2q80:D, 2q80:E, 2q80:F, 6r4v:A, 6r4v:F, 6r4v:E, 6r4v:B, 6r4v:D
18 4yxb:B 172 52 0.2069 0.1047 0.3462 8.5 4yxb:A
19 5iz3:A 316 56 0.1494 0.0411 0.2321 9.0 5iz3:B
20 6nbr:A 316 39 0.1724 0.0475 0.3846 9.7 6nbr:B, 6nbr:C, 6nbr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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