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BioLiP
>protein
ARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7myj:D 187 80 0.9875 0.4225 0.9875 1.81e-55 6b1u:B, 6b1u:D, 8bik:B, 8bik:E, 6c9f:B, 6c9g:B, 6c9j:B, 4cfe:B, 4cfe:D, 4cff:B, 4cff:D, 5ezv:B, 5ezv:D, 5iso:B, 5iso:D, 7myj:B, 4yef:A, 4yef:B, 4yef:C, 4yef:D, 4yef:E, 4yef:F, 4yef:G, 1z0m:A, 1z0m:B, 1z0m:C, 1z0n:A, 1z0n:B, 1z0n:C, 4zhx:B, 4zhx:D
2 6c9h:B 168 80 0.9750 0.4643 0.9750 4.81e-55 6e4t:B, 6e4u:B, 6e4w:B, 5kq5:B, 4qfr:B, 4qfs:B, 5t5t:B, 5ufu:B
3 6b2e:B 193 81 0.8125 0.3368 0.8025 8.67e-46 4cfh:B, 4rer:B, 4yee:A, 4yee:G, 4yee:B, 4yee:C, 4yee:D, 4yee:N, 4yee:E, 4yee:F, 4yee:H, 4yee:I, 4yee:J, 4yee:K, 4yee:L, 4yee:M, 4yee:O, 4yee:P, 4yee:Q, 4yee:R
4 4pyh:A 293 73 0.3375 0.0922 0.3699 8.11e-09
5 8dl1:A 713 51 0.2125 0.0238 0.3333 0.11 8dge:A, 8dge:B, 8dge:C, 8dge:D, 8dl1:B, 8dl1:C, 8dl1:D, 8dl2:A, 8dl2:B, 8dl2:C, 8dl2:D
6 2cdq:A 470 15 0.1250 0.0213 0.6667 0.74 2cdq:B
7 7esn:A 435 31 0.1500 0.0276 0.3871 1.5 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
8 5kdi:A 211 49 0.2000 0.0758 0.3265 1.7 5kdi:B
9 7ucw:B 281 17 0.1250 0.0356 0.5882 2.5 7ucw:A, 7ucw:C, 7ucw:D
10 8xx9:A 620 65 0.2250 0.0290 0.2769 3.0 8xxa:A
11 7dwx:A 605 31 0.1625 0.0215 0.4194 3.1 7dwx:C, 8i92:B, 8i92:D, 8i93:B, 8i93:D, 6m17:A, 6m17:C, 8wby:A, 8wby:D, 8wbz:A, 8wbz:D
12 3vu2:A 692 23 0.1250 0.0145 0.4348 3.2 7ml5:A, 3vu2:B
13 5clt:A 646 18 0.1000 0.0124 0.4444 3.4 5clt:B, 5clt:C, 5clw:A, 5clw:C, 5clw:B
14 5avp:A 240 22 0.1250 0.0417 0.4545 3.9 5avp:B, 5avp:C, 5avp:D
15 3ww1:A 242 22 0.1125 0.0372 0.4091 4.3 3ww1:B, 3ww2:A, 3ww2:B, 3ww3:A, 3ww3:B, 3ww4:A, 3ww4:B
16 4yxb:B 172 52 0.2375 0.1105 0.3654 4.6 4yxb:A
17 5wsz:A 169 55 0.1750 0.0828 0.2545 5.0 5wsz:B, 5wsz:C, 5wsz:D
18 8p23:B 715 22 0.1250 0.0140 0.4545 5.2 8p23:A, 8p27:A, 8p27:B, 8p28:A, 8p28:B, 8p28:C, 8p28:D, 8p2c:A, 8p2c:B, 8p2c:C, 8p2c:D, 8p2d:A, 8p2d:B, 8p2s:A, 8p2s:B, 8p39:A, 8p39:B
19 6e0l:A 292 18 0.1125 0.0308 0.5000 5.5
20 5iz3:A 316 56 0.1625 0.0411 0.2321 6.4 5iz3:B
21 6unz:A 539 65 0.2625 0.0390 0.3231 7.4 5l2r:A, 5l2r:B, 6msn:A, 6msn:B, 6unz:B, 6unz:C, 6unz:D, 6unz:E, 6unz:F, 6unz:G, 6unz:H, 6uo0:A, 6uo0:B, 6uoi:A, 6uoi:B, 6uoj:A, 6uoj:B, 6up9:A, 6up9:B, 6upm:A, 6upm:B, 6upo:A, 6upo:B, 6uq8:A, 6uq8:B, 6uq9:A, 6uq9:B, 6uqb:A, 6uqb:B, 6uql:A, 6uql:B, 6uqm:A, 6uqm:B, 6uqn:A, 6uqn:B
22 3d1c:A 358 40 0.1750 0.0391 0.3500 8.4
23 6r4v:C 294 45 0.1750 0.0476 0.3111 8.5 6g31:A, 6g31:B, 6g31:C, 6g31:D, 6g31:F, 6g31:G, 6g31:H, 6g31:I, 6g31:J, 6g31:K, 6g31:L, 2q80:A, 2q80:B, 2q80:C, 2q80:D, 2q80:E, 2q80:F, 6r4v:A, 6r4v:F, 6r4v:E, 6r4v:B, 6r4v:D
24 7wao:A 502 63 0.2125 0.0339 0.2698 8.6 7waj:A, 7wak:A, 7wal:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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