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BioLiP
>protein
ARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV
VQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTR
EIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDSADEVARKVMGMYTDPGHLRASDPGRVEGNPV
FTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLG
QVRRAMRLFGH

The query sequence (length=331) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2a4m:C 331 331 1.0000 1.0000 1.0000 0.0 1yi8:C, 1yia:B, 1yid:B
2 2g36:A 322 327 0.4502 0.4627 0.4557 1.63e-88
3 6ncr:A 342 327 0.4048 0.3918 0.4098 7.58e-81 6ncr:B
4 3tzl:B 320 326 0.2931 0.3031 0.2975 1.61e-42 3tzl:A
5 6dfu:A 332 334 0.3263 0.3253 0.3234 4.19e-41 6dfu:B
6 7cms:A 328 333 0.3082 0.3110 0.3063 1.45e-36 7cki:A, 7cms:B, 5dk4:A, 7eer:A, 7eer:B, 7eer:C, 7eer:D, 1i6k:A, 1i6l:A, 1i6m:A, 1m83:A, 1mau:A, 1maw:A, 1maw:B, 1maw:C, 1maw:D, 1maw:E, 1maw:F, 1mb2:A, 1mb2:B, 1mb2:C, 1mb2:D, 1mb2:E, 1mb2:F, 2ov4:A
7 8i1w:B 333 336 0.3172 0.3153 0.3125 6.16e-36 8i1y:A, 8i1y:B, 8i1z:A, 8i1z:B, 8i27:A, 8i27:B, 8i2a:B, 8i2a:A, 8i2c:A, 8i2c:B, 8i2j:A, 8i2j:B, 8i2l:B, 8i2l:A, 8i2m:A, 8i2m:B, 8i4i:A, 8i4i:B, 5v0i:A, 5v0i:B
8 5tew:A 333 324 0.3082 0.3063 0.3148 1.20e-35
9 5ekd:A 327 328 0.2810 0.2844 0.2835 1.67e-34 5ekd:B
10 7elt:A 330 329 0.3263 0.3273 0.3283 1.55e-33 7ens:A, 7ent:A, 7ev2:A, 7ev3:A
11 3sz3:A 341 343 0.3293 0.3196 0.3178 4.47e-30
12 3fi0:G 302 320 0.2749 0.3013 0.2844 2.06e-28 3fhj:A, 3fhj:B, 3fhj:E, 3fhj:F, 3fi0:A, 3fi0:B, 3fi0:C, 3fi0:D, 3fi0:E, 3fi0:F, 3fi0:H, 3fi0:I, 3fi0:J, 3fi0:K, 3fi0:L, 3fi0:M, 3fi0:N, 3fi0:O, 3fi0:P, 3fi0:Q, 3fi0:R
13 2yy5:B 346 334 0.2991 0.2861 0.2964 6.40e-28 2yy5:A, 2yy5:C, 2yy5:D
14 3fhj:D 286 329 0.2659 0.3077 0.2675 4.63e-26 3fhj:C
15 2cyb:A 319 307 0.2628 0.2727 0.2834 1.58e-18 2cyb:B
16 3a04:A 367 303 0.2628 0.2371 0.2871 2.52e-13 3a05:A
17 4nx2:A 313 305 0.2387 0.2524 0.2590 5.44e-12 2ag6:A, 7ckg:B, 3d6u:A, 3d6v:A, 2hgz:A, 4hjx:A, 4hjx:B, 4hpw:A, 1j1u:A, 5l7p:B, 3n2y:A, 3n2y:B, 5n5u:A, 4nda:A, 5nsf:B, 5nsf:A, 5nsf:C, 5nsf:D, 4pbr:A, 4pbs:A, 4pbt:A, 2pxh:A, 3qe4:A, 3qe4:B, 6wrk:A, 6wrn:A, 6wrq:A, 6wrt:A, 7ynw:A, 7ynw:B, 1zh0:A, 1zh6:A, 2zp1:A
18 5ujj:A 446 310 0.2356 0.1749 0.2516 3.29e-10 2ake:A, 2azx:A, 2azx:B, 2dr2:A, 2quh:A, 2quh:B, 2qui:A, 2qui:B, 2quj:A, 2quj:B, 1r6t:A, 1r6u:A, 5ujj:B
19 3jxe:B 363 302 0.2115 0.1928 0.2318 2.61e-08 3jxe:A
20 7ror:B 362 195 0.1601 0.1464 0.2718 3.35e-08 7ror:A, 7ros:A, 7ros:B, 7rot:A, 7rot:B, 3vgj:A, 3vgj:B
21 3kt8:D 410 314 0.2205 0.1780 0.2325 2.64e-07 3kt0:A, 3kt3:A, 3kt3:B, 3kt3:C, 3kt3:D, 3kt6:A, 3kt6:B, 3kt6:C, 3kt6:D, 3kt8:A, 3kt8:B, 3kt8:C
22 2cyc:A 371 320 0.2236 0.1995 0.2313 9.03e-07 2cyc:B
23 4j75:A 374 313 0.2326 0.2059 0.2460 1.88e-06 4j75:B, 4jfa:A, 4jfa:B, 4jfa:D
24 5usf:A 682 325 0.2447 0.1188 0.2492 2.51e-06 3p0h:A, 3p0i:A, 3p0j:C, 3p0j:D, 5usf:B
25 3p0j:A 657 253 0.1964 0.0989 0.2569 8.61e-06 3p0h:B, 3p0i:B, 3p0j:B
26 1h3f:B 406 216 0.1964 0.1601 0.3009 1.21e-05 1h3f:A
27 1h3e:A 427 128 0.1239 0.0960 0.3203 1.48e-05
28 7sc6:A 349 208 0.1511 0.1433 0.2404 4.73e-05 7scq:A, 7scq:B
29 4jfa:C 348 307 0.2115 0.2011 0.2280 2.33e-04
30 7rou:A 335 270 0.1873 0.1851 0.2296 6.97e-04 1q11:A, 4q93:A, 4qbt:A, 5thh:A
31 6ynv:e 417 133 0.1057 0.0839 0.2632 0.026 6ynx:e, 6ynx:E, 6yny:e, 6yny:E, 6ynz:e, 6ynz:E, 6ynz:e3, 6ynz:E3
32 6bqz:A 215 180 0.1601 0.2465 0.2944 0.28 6bqz:B
33 6k0w:D 435 89 0.0785 0.0598 0.2921 0.45 6k0w:C
34 6k0w:A 528 89 0.0785 0.0492 0.2921 0.46
35 3r3z:A 304 81 0.0816 0.0888 0.3333 0.66 6gxd:A, 6gxt:A, 5k3b:A, 5k3e:A, 6qhp:A, 6qhp:B, 6qhq:A, 6qhs:A, 6qht:A, 6qhu:A, 6qhv:A, 6qhw:A, 6qhw:B, 6qhx:A, 6qhx:B, 6qhy:A, 6qhz:A, 6qi0:A, 6qi0:B, 6qi1:A, 6qi2:A, 6qi3:A, 6qkt:A, 6qku:A, 6qkw:B, 3r3v:A, 3r3w:A, 3r3x:A, 3r3z:B, 3r3z:C, 3r3z:D, 5swn:A, 5t4t:B, 5t4t:A
36 2dlc:X 339 53 0.0514 0.0501 0.3208 1.5
37 3tqo:A 387 37 0.0423 0.0362 0.3784 2.2
38 8tlq:A 1283 41 0.0483 0.0125 0.3902 4.0 8tlt:A, 6v93:A
39 8cav:A 860 56 0.0665 0.0256 0.3929 5.6 8cav:B
40 2i6h:B 176 43 0.0544 0.1023 0.4186 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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