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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGF
NEGLWEIENNPGVKFTGY

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6iit:B 100 98 1.0000 0.9800 1.0000 2.39e-68 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
2 5xsk:A 90 89 0.7653 0.8333 0.8427 2.94e-52
3 3qj6:A 90 92 0.7245 0.7889 0.7717 1.36e-47 3qby:B
4 8cbn:L 86 89 0.6939 0.7907 0.7640 1.69e-45 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
5 6kcp:B 84 85 0.3878 0.4524 0.4471 4.56e-16 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
6 6g2b:A 123 78 0.2245 0.1789 0.2821 3.92e-04 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
7 9exw:A 148 66 0.2245 0.1486 0.3333 7.53e-04 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
8 9exy:B 135 66 0.2347 0.1704 0.3485 8.06e-04 6ue6:C, 6ue6:F
9 5b73:A 313 76 0.2245 0.0703 0.2895 0.007 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
10 4n4g:A 209 40 0.1531 0.0718 0.3750 0.033 4n4h:A, 4n4i:A, 4ns5:A
11 5nrr:B 137 23 0.1122 0.0803 0.4783 0.077 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
12 5ciu:B 121 23 0.1122 0.0909 0.4783 0.078
13 6g9w:B 468 52 0.1939 0.0406 0.3654 0.11 6g9v:B, 6g9w:A, 6tn3:B
14 8wg3:A 548 50 0.1633 0.0292 0.3200 0.30
15 8wg4:A 688 50 0.1633 0.0233 0.3200 0.35
16 3c02:A 242 87 0.2653 0.1074 0.2989 0.53
17 3mo8:A 127 19 0.1224 0.0945 0.6316 0.88 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
18 5ijg:B 403 35 0.1531 0.0372 0.4286 1.4 5ijg:A
19 3cx5:O 248 56 0.1837 0.0726 0.3214 3.7 3cx5:D, 3cxh:O, 3cxh:D, 8e7s:L, 8e7s:l, 8ec0:L, 8ec0:l, 1ezv:D, 6giq:D, 6giq:O, 6hu9:D, 6hu9:O, 2ibz:D, 1kb9:D, 1kyo:D, 1kyo:O, 1p84:D, 4pd4:D, 6t0b:D, 6t0b:O, 6t15:D, 6t15:O, 6ymx:D, 6ymx:O
20 8ihn:K 598 58 0.1633 0.0268 0.2759 5.2 8iht:K
21 6se3:D 528 38 0.1327 0.0246 0.3421 6.2 6se3:A, 6se3:B, 6se3:C, 6se3:E, 6se3:F
22 6zj3:Sg 199 50 0.1633 0.0804 0.3200 8.3
23 7lj1:G 182 36 0.1020 0.0549 0.2778 9.9 7wet:A, 7wet:B, 8x71:B, 8x73:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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