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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRD
HRNVRIKKPDYKVAYVQLAHGQTFTFPDLFP

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a5h:U 152 111 1.0000 0.7303 1.0000 7.54e-79 7a5f:U3, 7a5g:U3, 7a5i:U3, 7a5j:U, 7a5k:U3, 8any:U, 6i9r:U, 3j7y:U, 3j9m:U, 8k2a:LW, 8k2b:LW, 7l08:U, 7l20:U, 6nu2:U, 6nu3:U, 7o9k:U, 7o9m:U, 7odr:U, 7ods:U, 7odt:U, 7of0:U, 7of2:U, 7of3:U, 7of4:U, 7of5:U, 7of6:U, 7of7:U, 7og4:XU, 7oi6:U, 7oi7:U, 7oi8:U, 7oi9:U, 7oia:U, 7oib:U, 7oic:U, 7oid:U, 7oie:U, 8oir:BB, 8oit:BB, 5ool:U, 5oom:U, 7pd3:U, 8pk0:U, 7po4:U, 7qh6:U, 7qi4:U, 7qi5:U, 7qi6:U, 8qsj:U, 8qu1:U, 8qu5:U, 6vlz:U, 6vmi:U, 8xt0:LW, 8xt1:LW, 8xt2:LW, 8xt3:LW, 6zm6:U, 6zs9:XU, 6zsa:XU, 6zsb:XU, 6zsc:XU, 6zsd:XU, 6zse:XU, 6zsg:XU
2 6zm5:U 133 111 1.0000 0.8346 1.0000 2.65e-78
3 6gaw:BX 149 111 0.9189 0.6846 0.9189 5.96e-71 6gb2:BX, 7nqh:BX, 7nql:BX, 7nsh:BX, 7nsi:BX, 7nsj:BX, 8oin:BB, 8oiq:BB, 6ydp:BX, 6ydw:BX
4 5aj4:BX 134 111 0.9189 0.7612 0.9189 5.97e-71 7qh7:U, 4v19:X
5 4ce4:X 87 67 0.5586 0.7126 0.9254 1.67e-39
6 6ywe:P 180 71 0.2432 0.1500 0.3803 2.19e-08 6yws:P, 6ywv:P, 6ywx:P, 6ywy:P
7 7aih:N 189 67 0.2432 0.1429 0.4030 5.80e-06 7am2:N, 7ane:N
8 3j45:T 100 73 0.1892 0.2100 0.2877 1.23e-05 5aka:T, 3bbx:T, 8c9a:T, 2j28:T, 3j46:T, 3j9z:LR, 3ja1:LV, 6o9j:T, 4v4h:BT, 4v4h:DT, 4v4q:BT, 4v4q:DT, 4v5b:AT, 4v5b:CT, 4v65:BM, 4v66:BM, 4v6k:AU, 4v6l:BU, 4v6m:BT, 4v6n:AV, 4v6o:BV, 4v6p:BV, 4v6q:BV, 4v6r:BV, 4v6s:AV, 4v6v:BX, 7zq5:t, 7zq6:t
9 3j6b:P 207 100 0.2252 0.1208 0.2500 1.62e-05 5mrc:P, 5mre:P, 5mrf:P
10 6spf:T 94 94 0.2432 0.2872 0.2872 2.51e-04 8cd1:T, 6spb:T, 6spd:T, 6spg:T, 7unr:V, 7unu:V, 7unv:V, 7unw:V
11 6xyw:At 105 103 0.2883 0.3048 0.3107 2.55e-04
12 7z20:t 101 77 0.1712 0.1881 0.2468 0.008 8a3l:s, 7abz:T, 7ac7:T, 7acj:T, 7acr:T, 5ady:T, 5afi:T, 8akn:s, 8am9:s, 8ana:s, 8ap4:s, 9ax7:s, 9ax8:T, 8aye:s, 8b0x:s, 7b5k:T, 8b7y:b, 8bf7:Q, 8bge:Q, 8bgh:Q, 8bh4:Q, 8bhj:Q, 8bhl:Q, 8bhn:Q, 8bhp:Q, 8bil:Q, 8bim:Q, 7bl2:T, 7bl3:T, 7bl4:T, 7bl5:T, 7bl6:T, 6bu8:22, 7bv8:U, 6by1:CT, 6by1:DT, 6c4i:U, 8c8x:T, 8c8y:T, 8c8z:T, 8c90:T, 8c91:T, 8c92:T, 8c93:T, 8c97:T, 8c98:T, 8cam:s, 8ceu:s, 8cgd:s, 8cgk:s, 8cgv:s, 9cg5:s, 9cg6:s, 9cg7:s, 9cl9:T, 7cpj:T, 4csu:T, 7d6z:Z, 7d80:W, 6dnc:X, 8eiu:s, 8ekc:V, 8emm:s, 6enf:T, 6enj:T, 6enu:T, 9fbv:s, 8fiz:DA, 8fto:s, 8fzd:V, 8fze:V, 8fzf:V, 8fzg:V, 8fzh:V, 8fzi:V, 8fzj:V, 8g2u:T, 8g31:T, 8g34:T, 8g38:T, 8g6w:s, 8g6x:s, 8g6y:s, 8g7p:V, 8g7q:V, 8g7r:V, 8g7s:V, 5gad:U, 5gae:U, 5gaf:U, 5gag:U, 5gah:U, 6gbz:T, 6gc0:T, 6gc4:T, 6gc6:T, 6gc7:T, 6gc8:T, 6gwt:T, 6gxm:T, 6gxn:T, 6gxo:T, 6gxp:T, 6h4n:T, 5h5u:U, 6h58:T, 6h58:TT, 6hrm:T, 8hsp:s, 8htz:s, 8hu1:s, 6i0y:T, 6i7v:DU, 6i7v:CU, 8ifb:s, 8ifc:s, 5iqr:T, 5it8:CU, 5it8:DU, 8j1z:s, 3j5l:T, 5j5b:CU, 5j5b:DU, 3j7z:T, 5j7l:CU, 5j7l:DU, 3j8g:T, 5j88:CU, 5j88:DU, 5j8a:CU, 5j8a:DU, 3j9y:T, 5j91:CU, 5j91:DU, 3jbu:t, 3jbv:t, 3jcd:T, 3jce:T, 3jcj:S, 3jcn:T, 5jc9:CU, 5jc9:DU, 7jss:t, 7jsw:t, 7jsz:t, 5jte:BT, 7jt1:t, 7jt2:t, 7jt3:t, 5ju8:BT, 7k00:s, 7k50:t, 7k51:t, 7k52:t, 7k53:t, 7k54:t, 7k55:t, 5kcr:1X, 5kcs:1X, 5kps:T, 5kpv:S, 5kpw:S, 5kpx:S, 5l3p:X, 6lkq:b, 7lv0:t, 7lvk:b, 5lza:T, 5lzb:T, 5lzc:T, 5lzd:T, 5lze:T, 5lzf:T, 7m5d:T, 5mdv:T, 5mdw:T, 5mdy:T, 5mdz:T, 5mgp:T, 7n1p:LW, 7n2c:LW, 7n2u:LW, 7n2v:LW, 7n30:LW, 7n31:LW, 7nbu:s, 5nco:U, 5np6:r, 7nso:T, 7nsp:T, 7nsq:T, 5nwy:g, 7nwt:T, 7nww:S, 7o19:BT, 7o1a:BT, 7o1c:BT, 5o2r:T, 6o9k:T, 7ode:b, 6ofx:t, 6og7:t, 6ogf:t, 6ogg:t, 6ogi:t, 7oif:S, 7oig:S, 7oii:S, 7oiz:s, 7oj0:s, 6om6:T, 6ore:T, 6orl:T, 6osk:T, 6osq:T, 6ost:T, 6ot3:T, 7ot5:S, 7otc:T, 6ouo:T, 8p16:T, 8p17:T, 8p18:T, 7p3k:s, 8peg:w, 8phj:s, 6pj6:b, 7pjs:T, 7pjt:T, 7pju:T, 7pjv:T, 7pjw:T, 7pjx:T, 7pjy:T, 7pjz:T, 8pkl:w, 8pva:s, 7q4k:BT, 8q4f:s, 6q97:T, 6q98:T, 6q9a:T, 8qbt:T, 6qdw:t, 7qg8:g, 7qgh:g, 7qgn:g, 7qgr:g, 8qk7:T, 8qoa:s, 7qq3:b, 6qul:U, 8r6c:s, 8r8m:s, 8rpy:T, 8rpz:T, 8rq0:T, 8rq2:T, 6s0k:U, 7s1g:b, 7s1h:b, 7s1i:b, 7s1j:b, 7s1k:b, 7sa4:T, 7ss9:t, 7ssd:t, 7ssl:t, 7ssn:t, 7sso:t, 7ssw:t, 7st2:t, 7st6:t, 7st7:t, 8syl:V, 6szs:T, 8t5d:T, 8t5h:T, 6tbv:L231, 6tc3:L231, 7tos:L23, 4u1u:BT, 4u1u:DT, 4u1v:BT, 4u1v:DT, 4u20:BT, 4u20:DT, 4u24:BT, 4u24:DT, 4u25:BT, 4u25:DT, 4u26:BT, 4u26:DT, 4u27:BT, 4u27:DT, 5u4i:U, 6u48:CU, 5u9f:22, 5u9g:22, 7ug7:LW, 7uph:s, 8upo:2, 8upr:2, 8uql:2, 8uqm:2, 8uqp:2, 8ur0:2, 8urh:2, 8uri:2, 8urx:2, 8ury:2, 4uy8:T, 5uyk:22, 5uyl:22, 5uym:22, 5uyn:22, 5uyp:22, 5uyq:22, 4v4v:BR, 4v4w:BR, 4v50:BT, 4v50:DT, 4v52:BT, 4v52:DT, 4v53:BT, 4v53:DT, 4v54:BT, 4v54:DT, 4v55:BT, 4v55:DT, 4v56:BT, 4v56:DT, 4v57:BT, 4v57:DT, 4v5h:BT, 4v5y:BT, 4v5y:DT, 4v64:BT, 4v64:DT, 4v69:BT, 4v6c:BT, 4v6c:DT, 4v6d:BT, 4v6d:DT, 4v6e:BT, 4v6e:DT, 4v6t:BT, 4v6y:BT, 4v6z:BT, 4v70:BT, 4v71:BT, 4v72:BT, 4v73:BT, 4v74:BT, 4v75:BT, 4v76:BT, 4v77:BT, 4v78:BT, 4v79:BT, 4v7a:BT, 4v7b:BT, 4v7c:BV, 4v7d:AW, 4v7i:AT, 4v7s:BT, 4v7s:DT, 4v7t:BT, 4v7t:DT, 4v7u:BT, 4v7u:DT, 4v7v:BT, 4v7v:DT, 4v85:BX, 4v89:BX, 4v9c:BT, 4v9c:DT, 4v9d:CT, 4v9d:DT, 4v9o:AT, 4v9o:CT, 4v9o:ET, 4v9o:GT, 4v9p:AT, 4v9p:CT, 4v9p:ET, 4v9p:GT, 8vs9:L23, 8vsa:L23, 6vu3:2, 6vwl:R, 6vwm:R, 6vwn:R, 6vyq:2, 6vyr:2, 6vys:2, 6vyt:2, 6vyu:2, 6vyw:2, 6vyx:2, 6vyy:2, 6vyz:2, 6vz2:2, 6vz3:2, 6vz5:2, 6vz7:2, 6vzj:2, 8w51:U, 5wdt:T, 6wd0:t, 6wd1:t, 6wd2:t, 6wd3:t, 6wd4:t, 6wd5:t, 6wd6:t, 6wd7:t, 6wd8:t, 6wd9:t, 6wda:t, 6wdb:t, 6wdc:t, 6wdd:t, 6wde:t, 6wdf:t, 6wdg:t, 6wdh:t, 6wdi:t, 6wdj:t, 6wdk:t, 6wdl:t, 6wdm:t, 5we4:T, 5we6:T, 4wf1:BT, 4wf1:DT, 5wf0:T, 5wfk:T, 5wfs:T, 6wnt:t, 6wnv:t, 6wnw:t, 4woi:BT, 4woi:CT, 4www:RT, 4www:YT, 6x6t:2, 6x7f:2, 6x7k:2, 6x9q:2, 6xdq:2, 6xdr:2, 6xgf:2, 6xii:2, 6xij:2, 6xz7:T, 6xza:T2, 6xzb:T2, 6y69:T, 7y7c:s, 7y7d:s, 7y7e:s, 7y7f:s, 7y7g:s, 7y7h:s, 4ybb:CU, 4ybb:DU, 7yla:b, 6ys3:t, 6ysr:T, 6yss:T, 6yst:T, 6ysu:T, 7zod:t, 7zp8:t, 6ztj:BU, 6ztl:BU, 6ztm:BU, 6ztn:BU, 6zto:BU, 6ztp:BU, 7zta:L231, 6zu1:BU
13 6hiv:AX 168 58 0.1622 0.1071 0.3103 0.061 7aoi:AX, 6hix:AX, 6yxx:AX, 6yxy:AX
14 5myj:BH 174 51 0.1351 0.0862 0.2941 1.2
15 1kib:A 89 30 0.1081 0.1348 0.4000 1.7 1f1f:A, 1kib:B, 1kib:C, 1kib:D, 1kib:E, 1kib:F, 1kib:G, 1kib:H
16 7rro:D6 319 71 0.1441 0.0502 0.2254 2.4
17 7ueh:G 473 27 0.1081 0.0254 0.4444 2.8 7ueh:A, 7ueh:B, 7ueh:H, 7ueh:C, 7ueh:D
18 2oif:G 154 65 0.1441 0.1039 0.2462 3.7 2oif:A, 2oif:B, 2oif:C, 2oif:D, 2oif:E, 2oif:F, 2oif:H
19 6jvx:A 87 35 0.1081 0.1379 0.3429 5.5 6jvy:A
20 6hiy:DA 1426 34 0.1261 0.0098 0.4118 5.6
21 2g80:A 225 32 0.0811 0.0400 0.2812 5.6 2g80:B, 2g80:C, 2g80:D
22 8otz:EV 425 71 0.1441 0.0376 0.2254 5.6
23 6hiv:DA 1557 34 0.1261 0.0090 0.4118 6.1 6hiw:DA, 7pub:DA
24 8iyj:D2 424 71 0.1532 0.0401 0.2394 6.4 8iyj:D1, 8iyj:D3, 8iyj:D4
25 1vp4:A 420 28 0.0991 0.0262 0.3929 6.5 1vp4:B
26 1i7l:A 309 55 0.1802 0.0647 0.3636 8.0 1i7l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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