Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYK

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qmb:A 54 52 1.0000 0.9630 1.0000 1.21e-32 3qmc:A, 3qmd:A, 3qmg:A, 3qmh:A, 3qmi:A
2 5w9q:A 56 42 0.5385 0.5000 0.6667 3.64e-12 5w9q:B
3 4o64:A 116 40 0.5000 0.2241 0.6500 1.70e-11 4o64:B, 4o64:C
4 4bbq:A 111 40 0.4615 0.2162 0.6000 2.64e-09 4bbq:B
5 6asb:F 85 30 0.3846 0.2353 0.6667 2.93e-09
6 6asb:I 121 29 0.3846 0.1653 0.6897 3.05e-09 6asb:C, 6asb:L
7 2j2s:A 72 44 0.4231 0.3056 0.5000 1.98e-08 2jyi:A, 2kkf:A, 4nw3:A
8 4pzi:A 61 47 0.4423 0.3770 0.4894 5.46e-08
9 3swr:A 965 42 0.4038 0.0218 0.5000 4.11e-06
10 4wxx:B 1178 42 0.4038 0.0178 0.5000 4.24e-06 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A
11 3pt6:B 915 42 0.4038 0.0230 0.5000 8.76e-06 4da4:A, 3pt6:A, 6w8v:A
12 5exh:C 45 42 0.3077 0.3556 0.3810 0.003 4z3c:C
13 6asd:C 45 23 0.1923 0.2222 0.4348 0.11
14 2dfv:A 346 27 0.2308 0.0347 0.4444 0.12 2d8a:A, 2dfv:B, 2dfv:C
15 8hyj:C 285 21 0.1923 0.0351 0.4762 0.29
16 5vc9:C 46 41 0.2885 0.3261 0.3659 0.41 5vc9:F
17 4q47:A 513 54 0.3462 0.0351 0.3333 1.0 4q47:B, 4q48:A, 4q48:B
18 4xsv:A 306 18 0.1731 0.0294 0.5000 1.5 3elb:A
19 6dkh:C 346 33 0.2115 0.0318 0.3333 2.0 6dkh:A, 6dkh:B, 6dkh:D
20 1oyw:A 516 16 0.1731 0.0174 0.5625 2.7 1oyy:A
21 4eez:B 342 24 0.1923 0.0292 0.4167 2.9 4eex:A, 4eex:B, 4eez:A
22 4oh1:A 351 25 0.1923 0.0285 0.4000 2.9
23 1rjw:A 339 7 0.1154 0.0177 0.8571 3.2 3pii:A, 3pii:C, 3pii:B, 3pii:D, 1rjw:B, 1rjw:C, 1rjw:D
24 5w9s:C 44 23 0.2115 0.2500 0.4783 3.4
25 4hp1:C 51 41 0.2692 0.2745 0.3415 5.2 4hp3:C
26 4gkv:B 336 9 0.1154 0.0179 0.6667 5.4 4gkv:C, 4gkv:A, 4gkv:D
27 3glf:G 378 21 0.1538 0.0212 0.3810 6.5 8giy:B, 8giy:C, 8giy:D, 8giz:B, 8giz:C, 8giz:D, 8gj0:B, 8gj0:C, 8gj0:D, 8gj1:B, 8gj1:C, 8gj1:D, 8gj2:B, 8gj2:C, 8gj2:D, 8gj3:B, 8gj3:C, 8gj3:D, 3glf:B, 3glf:C, 3glf:D, 3glf:H, 3glf:I, 3glg:B, 3glg:C, 3glg:D, 3glg:G, 3glg:H, 3glg:I, 3gli:B, 3gli:C, 3gli:D, 3gli:G, 3gli:H, 3gli:I, 1jr3:A, 1jr3:B, 1jr3:C, 1njf:A, 1njf:B, 1njf:C, 1njf:D, 1njg:A, 1njg:B, 8val:B, 8val:C, 8val:D, 8vam:B, 8vam:C, 8vam:D, 8vap:B, 8vap:C, 8vap:D, 8vaq:B, 8vaq:C, 8vaq:D, 8var:B, 8var:C, 8var:D, 8vas:B, 8vas:C, 8vas:D, 8vat:B, 8vat:C, 8vat:D, 1xxh:B, 1xxh:C, 1xxh:D, 1xxh:G, 1xxh:H, 1xxh:I, 1xxi:B, 1xxi:C, 1xxi:D, 1xxi:G, 1xxi:H, 1xxi:I
28 4eue:A 398 26 0.1923 0.0251 0.3846 9.2 4euf:A
29 7bu2:B 339 10 0.1346 0.0206 0.7000 9.3 7bu2:A, 7bu3:A, 7bu3:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218