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BioLiP
>protein
ARKVKQYKNPHTGEVIETKGGNHKTLKEWKAKWGPEAVESWATLLGH

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2mxf:A 47 47 1.0000 1.0000 1.0000 7.15e-29
2 1t0s:B 323 30 0.2553 0.0372 0.4000 1.3
3 7nac:p 337 52 0.3830 0.0534 0.3462 1.9 7nad:p, 7r72:p, 7r7a:p
4 5afe:A 124 27 0.2340 0.0887 0.4074 3.0 2ypj:A
5 1tah:B 318 36 0.2766 0.0409 0.3611 3.2 1cvl:A, 2es4:A, 2es4:B, 1qge:E, 1tah:A, 1tah:C, 1tah:D
6 5ze8:A 385 44 0.2553 0.0312 0.2727 4.0
7 7olc:SI 201 41 0.2553 0.0597 0.2927 4.5 7old:SI, 8oo0:SI, 5oql:q, 7r81:J2, 7z3n:SI, 7z3o:SI
8 7va2:A 180 17 0.1915 0.0500 0.5294 4.8 7va3:A, 7va3:B, 7va6:A, 7va6:B
9 6rxu:Cf 174 41 0.2553 0.0690 0.2927 5.0 6rxv:Cf, 6rxx:Cf, 6rxz:Cf
10 1pj6:A 828 25 0.1915 0.0109 0.3600 7.5 3gsi:A, 1pj5:A, 1pj7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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