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BioLiP
>protein
ARKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWEDE

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dax:A 64 64 1.0000 1.0000 1.0000 1.82e-41 1dfd:A, 1fxr:A, 1fxr:B
2 1dwl:A 59 60 0.4062 0.4407 0.4333 5.70e-08
3 1f2g:A 58 52 0.3750 0.4138 0.4615 2.12e-07 1fxd:A
4 4dhv:B 66 67 0.4531 0.4394 0.4328 6.03e-05 4dhv:A, 3pni:A, 3pni:B, 1siz:A, 1siz:C, 1sj1:A, 1sj1:B, 2z8q:A, 2z8q:B
5 6cfw:N 121 63 0.2812 0.1488 0.2857 0.009
6 5t61:L 348 30 0.2031 0.0374 0.4333 0.17 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
7 5t61:L 348 37 0.1719 0.0316 0.2973 4.0 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
8 1rof:A 60 60 0.3125 0.3333 0.3333 0.42 1vjw:A
9 4v4c:B 274 54 0.2500 0.0584 0.2963 0.70 4v4c:D, 4v4c:F, 4v4c:H, 4v4c:J, 4v4c:L, 4v4c:N, 4v4c:P, 4v4c:R, 4v4c:T, 4v4c:V, 4v4c:X, 4v4d:B, 4v4d:D, 4v4d:F, 4v4d:H, 4v4d:J, 4v4d:L, 4v4d:N, 4v4d:P, 4v4d:R, 4v4d:T, 4v4d:V, 4v4d:X, 4v4e:B, 4v4e:D, 4v4e:F, 4v4e:H, 4v4e:J, 4v4e:L, 4v4e:N, 4v4e:P, 4v4e:R, 4v4e:T, 4v4e:V, 4v4e:X
10 3mm5:B 363 31 0.1719 0.0303 0.3548 1.1 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
11 1ys4:A 348 37 0.2344 0.0431 0.4054 1.6 1ys4:B
12 1kao:A 167 40 0.2344 0.0898 0.3750 1.7 2rap:A, 3rap:R, 3rap:S
13 6tg9:A 949 49 0.1875 0.0126 0.2449 1.8 6tg9:E, 6tga:A, 6tga:E
14 7wfg:I 160 20 0.1406 0.0563 0.4500 1.9 7wg5:I
15 8a6t:B 630 35 0.1875 0.0190 0.3429 2.3 8a6t:E, 8bew:B, 8bew:E
16 6hum:I 193 20 0.1406 0.0466 0.4500 2.4 6khi:I, 6khj:I, 6l7o:I, 6l7p:I, 6nbq:I, 6nbx:I, 6nby:I, 6tjv:I
17 6z1f:3 284 20 0.1562 0.0352 0.5000 2.5 6z1d:B, 6z1e:B, 6z1f:1, 6z1f:2, 6z1f:4, 6z1f:5, 6z1f:6
18 8a6t:A 571 29 0.1875 0.0210 0.4138 3.0 8a6t:D, 8bew:A, 8bew:D
19 6nsm:A 194 38 0.2188 0.0722 0.3684 3.2 6nsm:B, 6nsn:A, 6nsn:B, 6nsr:A, 6nsr:B
20 7bkc:K 321 21 0.1562 0.0312 0.4762 3.4 7bkc:k
21 4ov1:A 66 25 0.1562 0.1515 0.4000 3.6 4id8:A
22 6s7q:A 497 22 0.1562 0.0201 0.4545 4.0 6s7q:D, 6s7q:B, 6s7q:C, 6s7q:E, 6s7q:H, 6s7q:F, 6s7q:G
23 7bkb:K 386 21 0.1562 0.0259 0.4762 4.0 7bkb:k, 7bkc:M, 7bkc:m
24 6kyk:C 169 40 0.2344 0.0888 0.3750 4.1 3brw:D, 1c1y:A, 7c7i:A, 7c7i:B, 7c7j:A, 7c7j:B, 4dxa:A, 1gua:A, 4hdo:B, 4hdq:B, 5kho:C, 5kho:D, 3kuc:A, 4kvg:A, 4kvg:C, 6kyk:D, 6kyk:E, 6kyk:F, 4m8n:E, 4m8n:F, 4m8n:G, 4m8n:H, 6oq3:B, 6oq4:B, 8su8:B, 8t09:B, 8t7v:B, 6uzk:B, 3x1w:A, 3x1x:A, 3x1y:A, 3x1z:A, 3x1z:B
25 7qv7:B 183 30 0.1875 0.0656 0.4000 4.3 7qv7:C, 7qv7:J, 7qv7:N, 7qv7:P, 7qv7:X
26 2v4j:A 436 43 0.1875 0.0275 0.2791 4.6 2v4j:D
27 1clf:A 55 19 0.1250 0.1455 0.4211 6.2
28 5eyw:A 244 27 0.2031 0.0533 0.4815 6.5 5eyw:B
29 7qbu:A 418 44 0.2031 0.0311 0.2955 6.6 7qbs:A, 7qbt:A, 7qbt:B, 7qbt:C, 7qbt:D, 7qbu:B, 7qbv:A, 7qbv:B, 7qbv:C, 7qbv:D
30 6x6u:B 167 44 0.2188 0.0838 0.3182 6.9 6x1o:B, 6x1o:D, 6x6u:D
31 2vpw:F 193 63 0.2812 0.0933 0.2857 7.5 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
32 8rbq:C 477 38 0.2031 0.0273 0.3421 7.8 8ahx:C, 8rb8:C, 8rb9:C, 8rbm:C
33 1h98:A 77 20 0.1406 0.1169 0.4500 8.0
34 7zc6:B 202 55 0.2344 0.0743 0.2727 8.1
35 6jcy:F 164 46 0.2188 0.0854 0.3043 8.2
36 4min:A 339 26 0.1562 0.0295 0.3846 8.5 4min:B, 4min:C, 4min:D, 4mio:A, 4mio:B, 4mio:C, 4mio:D, 4miy:A, 4miy:B, 4miy:C, 4miy:D, 4mjl:A, 4mjl:B, 4mjl:C, 4mjl:D
37 5ch7:B 329 39 0.1562 0.0304 0.2564 8.6 5ch7:D, 5ch7:F, 5chc:B, 5chc:D, 5chc:F, 5e7o:B, 5e7o:D, 5e7o:F, 5e7o:H, 5e7o:J, 5e7o:L, 4ydd:B, 4ydd:D, 4ydd:F
38 5odc:A 653 40 0.2188 0.0214 0.3500 8.7 5odc:G, 5odh:A, 5odh:G, 5odi:A, 5odi:G, 5odq:A, 5odq:G, 5odr:A, 5odr:G
39 5odc:A 653 37 0.1875 0.0184 0.3243 9.2 5odc:G, 5odh:A, 5odh:G, 5odi:A, 5odi:G, 5odq:A, 5odq:G, 5odr:A, 5odr:G
40 1dur:A 55 27 0.1719 0.2000 0.4074 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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