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BioLiP
>protein
ARKFFVGGNWKMNGTIESIKSLVETLNNAELDDNTEVVVAPPAIYLPLVRQSLRKDIQVAAQNCYTKASGAFTGEISAEM
LKDLGIPWVILGHSERRQIFGESDEFVAEKTKYALDNGLKVILCIGETLEEREAGKTMDVVTRQLKAIADKISESDWSKV
VIAYEPVWAIGTGKVATPEQAQEVHAEIRKWLAENVSAEVAESTRIIYGGSVNGGNCKELAKQPDIDGFLVGGASLKPEF
VDIINARQK

The query sequence (length=249) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8w06:B 251 249 1.0000 0.9920 1.0000 0.0 8v09:A, 8v0a:B, 8w06:A, 8w06:C, 8w06:D, 8w06:E, 8w06:F, 8w06:G, 8w06:H
2 6nee:B 252 252 0.8635 0.8532 0.8532 5.45e-155 6nee:A
3 6ooi:C 255 249 0.6506 0.6353 0.6506 3.30e-120 6ooi:A, 6ooi:B, 6ooi:D, 6ooi:E, 6ooi:F, 6ooi:G, 6ooi:H
4 1hti:B 248 248 0.6627 0.6653 0.6653 3.46e-119 4owg:A, 4owg:B, 4poc:B, 4pod:B, 1r2r:B, 7rde:B, 7t0q:A, 6up5:B, 6upf:A, 6upf:B, 7uxv:A, 7uxv:B
5 1ssg:A 247 247 0.6627 0.6680 0.6680 5.33e-118 1ssg:B, 1su5:A, 1su5:B, 1sw0:A, 1sw0:B, 1sw3:A, 1sw3:B, 1sw7:A, 1sw7:B, 1tpb:1, 1tpb:2, 1tpc:1, 1tpc:2, 1tph:1, 1tph:2, 1tpu:A, 1tpu:B, 1tpv:A, 1tpv:B, 1tpw:A, 1tpw:B
6 5zfx:B 248 246 0.6345 0.6371 0.6423 6.84e-117
7 5eyw:A 244 246 0.6345 0.6475 0.6423 4.74e-115 5eyw:B
8 6oog:A 252 248 0.6064 0.5992 0.6089 2.14e-110
9 4ff7:A 247 249 0.5944 0.5992 0.5944 2.51e-105 4ff7:B, 7tim:A, 7tim:B, 2ypi:A, 2ypi:B, 3ypi:A, 3ypi:B
10 4bi7:A 256 248 0.5462 0.5312 0.5484 2.33e-96 4bi6:A, 3pf3:A
11 1amk:A 250 243 0.5502 0.5480 0.5638 1.48e-95 7abx:A, 7az3:A, 7az4:A, 7az9:A, 7aza:A, 1if2:A, 1n55:A, 1qds:A, 2vxn:A, 2y61:A, 2y62:A, 2y63:A
12 1ci1:B 249 241 0.5382 0.5382 0.5560 9.21e-94
13 5gzp:A 246 247 0.5181 0.5244 0.5223 1.23e-86 5gv4:A, 5gzp:B, 1lyx:A, 1lzo:B, 1lzo:D, 1m7p:A, 1m7p:B, 1o5x:A, 1o5x:B, 3pvf:A, 1woa:A, 1woa:B, 1woa:C, 1woa:D, 1wob:A, 1wob:B, 1wob:C, 1wob:D
14 1ag1:T 249 241 0.5301 0.5301 0.5477 3.88e-86 5i3h:B, 5i3i:A, 5i3i:B, 5i3i:C, 5i3i:D, 5i3k:B, 5i3k:C, 5i3k:D, 1iig:B, 2j27:A, 2j27:B, 1kv5:A, 1kv5:B, 4tim:B, 6tim:B, 1trd:B, 1tsi:A, 2v2c:A
15 2y6z:A 256 244 0.5060 0.4922 0.5164 1.43e-78 1ml1:A, 1ml1:C, 1ml1:E, 1ml1:G, 1ml1:I, 1ml1:K, 4pc8:A, 1tti:A, 1ttj:A, 2v2h:A, 2v2h:B, 2v2h:C, 2vek:B, 2vel:A, 2vel:B, 2vem:A, 2vem:B, 2wsr:A, 2x1r:A, 2x1r:B, 2x1s:A, 2x1s:B, 2x1t:B
16 4y96:A 250 247 0.4779 0.4760 0.4818 6.71e-74 4y96:B
17 4mva:A 255 246 0.4900 0.4784 0.4959 1.53e-70 4mva:B
18 3uwv:A 255 248 0.4659 0.4549 0.4677 7.32e-70 3uwu:A, 3uwu:B, 3uwv:B, 3uww:A, 3uww:B, 3uwz:A, 3uwz:B
19 1aw1:A 255 240 0.4699 0.4588 0.4875 5.31e-67 1aw1:B, 1aw1:D, 1aw1:E, 1aw1:G, 1aw1:H, 1aw1:J, 1aw1:K
20 1btm:A 251 248 0.4458 0.4422 0.4476 2.56e-64 1btm:B, 2btm:A, 2btm:B
21 6bve:A 242 253 0.4297 0.4421 0.4229 2.87e-56 6bve:B
22 3tao:A 256 246 0.4257 0.4141 0.4309 1.01e-52
23 4y90:A 244 240 0.4137 0.4221 0.4292 6.91e-51 4y90:B, 4y90:C, 4y90:D
24 2jgq:A 231 223 0.3092 0.3333 0.3453 9.88e-34 2jgq:B
25 1w0m:A 225 204 0.2169 0.2400 0.2647 1.54e-06 1w0m:B, 1w0m:C, 1w0m:D, 1w0m:E, 1w0m:F, 1w0m:G, 1w0m:H
26 5csr:C 220 130 0.1566 0.1773 0.3000 3.27e-04 5csr:A, 5csr:B, 5csr:D, 5css:A, 5css:B, 5css:C, 5css:D
27 1hg3:A 224 88 0.1044 0.1161 0.2955 7.06e-04 1hg3:B, 1hg3:C, 1hg3:D, 1hg3:E, 1hg3:F, 1hg3:G, 1hg3:H
28 6gmf:A 386 68 0.0843 0.0544 0.3088 0.32
29 3tkk:A 301 36 0.0522 0.0432 0.3611 0.35 3tkk:B, 3tkk:C, 3tkk:D
30 6b6w:B 628 53 0.0723 0.0287 0.3396 0.53 6b6v:A, 6b6v:B, 6b6w:A, 6b6x:A, 6b6x:B, 6b6y:A, 6b6y:B, 6dc2:A, 6dc2:B, 6dc2:C, 6dc2:D, 6onc:A, 6onc:B, 6onc:C, 6onc:D, 6ond:A, 6ond:B, 6ond:C, 6ond:D, 6ons:A, 7tsj:A, 6vwy:A, 6vwy:B, 6vwz:A, 6vwz:B, 6vx0:A, 6vx0:B, 6vx1:A, 6vx1:B
31 8hp3:A 298 67 0.0763 0.0638 0.2836 2.0 8hp3:B, 8hp3:C
32 3tr0:A 201 31 0.0602 0.0746 0.4839 3.8
33 4s2q:D 76 54 0.0643 0.2105 0.2963 4.8 4euw:A
34 5hxw:A 433 77 0.0884 0.0508 0.2857 5.3 5hxw:B, 5hxw:C, 5hxw:D, 5hxw:E, 5hxw:F
35 5i39:A 383 77 0.0884 0.0574 0.2857 6.5
36 1i19:A 541 71 0.0723 0.0333 0.2535 8.5 2i0k:A, 1i19:B
37 2gfq:A 288 102 0.1165 0.1007 0.2843 9.6 2gfq:B, 2gfq:C
38 4apy:A 414 86 0.1004 0.0604 0.2907 9.9 5dqn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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