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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ARIHARKRGKSGSKRPPRTAPPAWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLA
PEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLV

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tmf:R 151 149 0.9262 0.9139 0.9262 1.64e-98 6skf:Aq, 6skg:Aq, 6th6:Aq
2 5jb3:Q 158 156 0.8658 0.8165 0.8269 1.62e-88 5jbh:Q, 6sw9:Q, 6swc:Q, 6swd:Q, 4v4n:BQ, 4v6u:AQ, 7zag:Q, 7zah:Q, 7zai:Q, 7zhg:Q
3 8hkx:S15P 149 144 0.5705 0.5705 0.5903 2.21e-53 8hky:S15P, 8hkz:S15P, 8hl1:S15P, 8hl2:S15P, 8hl3:S15P, 8hl4:S15P, 8hl5:S15P, 8wkp:S15P, 8wq2:S15P, 8wq4:S15P
4 8ip8:pa 150 149 0.5101 0.5067 0.5101 4.18e-49 8ip9:pa, 8ipa:pa, 8ipb:pa, 8jiw:BN, 8r6f:N, 4v3p:SO, 4v7e:BN, 1ysh:E
5 7olc:SN 150 149 0.4966 0.4933 0.4966 1.13e-47 7old:SN, 8oo0:SN, 7r81:O2, 6rxx:Ch, 7z3n:SN, 7z3o:SN
6 7qix:R 150 149 0.4899 0.4867 0.4899 1.64e-46 8auv:W, 8b2l:W1, 7qiz:HA
7 4bts:AO 152 148 0.4765 0.4671 0.4797 1.25e-45 4bts:BO, 4bts:CO, 4bts:DO, 4v5o:AO, 4v5o:BO
8 6zj3:ST 148 149 0.4966 0.5000 0.4966 2.79e-45
9 5xxu:N 150 149 0.4698 0.4667 0.4698 1.43e-44
10 8ovj:ST 143 141 0.4497 0.4685 0.4752 4.33e-44 8a3w:ST, 8a98:ST, 6az1:T, 8rxh:ST, 8rxx:ST, 5t2a:AG
11 8ova:AG 150 148 0.4698 0.4667 0.4730 5.19e-44 7ase:R, 5opt:R, 8ove:AG, 4v8m:AG
12 6fyx:N 151 149 0.4564 0.4503 0.4564 1.32e-43 7a1g:Y, 7ajt:DN, 7aju:DN, 7b7d:Y, 8bn3:C3, 8bqd:Y, 8bqx:Y, 8c00:Y, 8c01:Y, 8c3a:P, 8c3a:DA, 8c83:Y, 8cah:Y, 8cas:Y, 8cbj:N, 8ccs:p, 8cdl:p, 8cdr:p, 8ceh:p, 8cf5:p, 8cg8:p, 8cgn:p, 8civ:p, 8cku:p, 8cmj:p, 8cq7:P, 8cq7:DA, 8cqw:P, 8cqw:DA, 8cre:P, 8cre:DA, 7d4i:SO, 7d5s:SO, 7d5t:SO, 7d63:SO, 5dat:C3, 5dat:c3, 5dc3:C3, 5dc3:c3, 5dge:C3, 5dge:c3, 5dgf:C3, 5dgf:c3, 5dgv:C3, 5dgv:c3, 6eml:Y, 8eub:BN, 8evp:BN, 8evq:BN, 8evr:BN, 8evs:BN, 8evt:BN, 8ewb:BN, 8ewc:BN, 6fai:N, 5fci:C3, 5fci:c3, 5fcj:C3, 5fcj:c3, 6fyy:N, 6gq1:AD, 6gqb:AD, 6gqv:AD, 6gsm:N, 6gsn:N, 6hhq:O, 6hhq:c3, 5i4l:C3, 5i4l:c3, 6i7o:Y, 6i7o:Yb, 8i7j:N, 5it7:N, 5it9:N, 3j6x:13, 3j6y:13, 3j77:13, 3j78:13, 3j80:N, 3j81:N, 3jam:N, 3jap:N, 5juo:KB, 5jup:KB, 5jus:KB, 5jut:KB, 5juu:KB, 8k2d:SN, 8k82:SN, 6ke6:SO, 5ll6:Y, 6lqp:SO, 6lqq:SO, 6lqr:SO, 6lqs:SO, 6lqt:SO, 6lqu:SO, 5lyb:C3, 5lyb:c3, 5m1j:N2, 5mc6:Y, 5mei:O, 5mei:c3, 7mpi:BN, 7mpj:BN, 7n8b:BN, 5ndg:C3, 5ndg:c3, 5ndv:C3, 5ndv:c3, 5ndw:C3, 5ndw:c3, 7nrc:SY, 7nrd:SY, 5obm:C3, 5obm:c3, 8oeq:P, 8oeq:DA, 5on6:O, 5on6:c3, 7osa:uS15, 7osm:uS15, 7pzy:O, 7q08:O, 7q0f:O, 7q0p:O, 7q0r:O, 8q5i:O, 6q8y:Y, 6rbd:N, 6rbe:N, 7rr5:SN, 8rw1:N, 6s47:BO, 8s8d:N, 8s8e:N, 8s8f:N, 8s8g:N, 8s8h:N, 8s8i:N, 8s8j:N, 6snt:N, 7suk:NF, 6sv4:Y, 6sv4:Yb, 6sv4:Yc, 6t4q:SN, 6t7i:SN, 6t7t:SN, 6t83:Nb, 6t83:o, 5tbw:O, 5tbw:c3, 6tb3:Y, 5tga:C3, 5tga:c3, 5tgm:C3, 5tgm:c3, 6tnu:Y, 4u3m:C3, 4u3m:c3, 4u3n:C3, 4u3n:c3, 4u3u:C3, 4u3u:c3, 4u4n:C3, 4u4n:c3, 4u4o:C3, 4u4o:c3, 4u4q:C3, 4u4q:c3, 4u4r:C3, 4u4r:c3, 4u4u:C3, 4u4u:c3, 4u4y:C3, 4u4y:c3, 4u4z:C3, 4u4z:c3, 4u50:C3, 4u50:c3, 4u51:C3, 4u51:c3, 4u52:C3, 4u52:c3, 4u53:C3, 4u53:c3, 4u55:C3, 4u55:c3, 4u56:C3, 4u56:c3, 4u6f:C3, 4u6f:c3, 4uer:O, 6uz7:N, 4v4b:AO, 4v6i:AO, 4v7h:AO, 4v7r:AG, 4v7r:CG, 4v88:AN, 4v88:CN, 4v8y:AN, 4v8z:AN, 4v92:BN, 6wdr:N, 5wlc:NF, 6woo:NN, 7wtl:SN, 7wtm:SN, 7wtn:SN, 7wto:SN, 7wtp:SN, 7wtq:SN, 7wtr:SN, 5wyj:SO, 5wyk:SO, 6xiq:AD, 6xir:AD, 8y0u:SN, 6y7c:N, 6z6j:SN, 6z6k:SN, 6zce:O, 7zpq:AN, 6zqa:DN, 6zqb:DN, 6zqc:DN, 6zqd:DN, 6zqe:DN, 6zqf:DN, 6zqg:DN, 7zrs:AN, 6zu9:Y, 7zuw:AN, 7zux:DN, 6zvi:v, 7zw0:sY
13 3j7a:U 149 148 0.4430 0.4430 0.4459 3.15e-42 3jbn:U, 3jbo:U, 3jbp:U, 6okk:U, 8tpu:SU
14 8fvy:N 153 149 0.4765 0.4641 0.4765 1.01e-41 8br8:SP, 8brm:SP, 8bsi:SP, 8bsj:SP, 8btd:SP, 8btr:SP, 8g4s:N, 7pwf:N, 7pwo:N1
15 7a01:F3 150 149 0.4497 0.4467 0.4497 2.26e-41 7a09:m, 5a2q:N, 5aj0:BN, 9bdl:AS13, 9bdn:AS13, 9bdp:AS13, 8bhf:O3, 9bkd:I, 9bln:I, 8btk:Am, 7cpu:SN, 7cpv:SN, 4d5l:N, 4d61:N, 6d90:OO, 6d9j:OO, 9f1b:Am, 9f1c:Am, 9f1d:Am, 6fec:Z, 5flx:N, 6g18:N, 6g4s:N, 6g4w:N, 6g51:N, 6g53:N, 6g5h:N, 6g5i:N, 8g5y:SN, 8g5z:SN, 8g60:SN, 8g61:SN, 8g6j:SN, 8glp:SN, 6gz3:BN, 6gz4:BN, 6gz5:BN, 6hcf:O1, 6hcj:O2, 6hcm:O1, 6hcq:O2, 8ifd:3K, 8ife:3K, 6ip5:3K, 6ip6:3K, 6ip8:3K, 3j7p:SN, 3j7r:SN, 3jag:NN, 3jah:NN, 3jai:NN, 3jaj:SN, 3jan:SN, 8jdj:9, 8jdk:9, 8jdl:9, 8jdm:9, 7jqb:P, 7jqc:P, 5k0y:Z, 8k2c:SN, 7k5i:N, 4kzx:N, 4kzy:N, 4kzz:N, 5lks:SN, 7ls1:N3, 7ls2:N3, 5lzs:NN, 5lzt:NN, 5lzu:NN, 5lzv:NN, 5lzw:NN, 5lzx:NN, 5lzy:NN, 5lzz:NN, 7mdz:NN, 7mq8:NF, 7mq9:NF, 7mqa:NF, 6mtb:NN, 6mtc:NN, 6mtd:NN, 6mte:NN, 7nwg:O2, 7nwh:NN, 7nwi:NN, 7o7y:Am, 7o7z:Am, 7o80:Am, 7o81:Am, 5oa3:N, 6ole:SN, 6olf:SN, 6olg:BN, 6oli:SN, 6olz:BN, 6om0:SN, 6om7:SN, 5oql:s, 7oya:N2, 7oyb:N2, 7oyc:N2, 7oyd:NN, 8oz0:V, 8p03:P, 8p09:P, 8p2k:Am, 6p4g:O, 6p4h:O, 6p5i:O, 6p5j:O, 6p5k:O, 6p5n:O, 8pj1:I, 8pj2:I, 8pj3:I, 8pj4:I, 8pj5:I, 8pj6:I, 8ppk:N, 8ppl:AN, 8q7z:Am, 8q87:Am, 7qgg:SN, 8qoi:SN, 7qp6:I, 7qp7:I, 7qvp:RN, 7qvp:SN, 6qzp:SN, 7r4x:N, 6r5q:QQ, 6r6g:QQ, 6r6p:QQ, 6r7q:QQ, 8rg0:I, 6rxt:Ch, 6rxu:Ch, 6rxv:Ch, 6rxy:Ch, 6rxz:Ch, 8scb:NN, 6sgc:O1, 7syg:O, 7syh:O, 7syi:O, 7syj:O, 7syk:O, 7syl:O, 7sym:O, 7syn:O, 7syo:O, 7syp:O, 7syq:O, 7syr:O, 7sys:O, 7syt:O, 7syu:O, 7syv:O, 7syw:O, 7syx:O, 5t2c:AN, 8t4s:N, 7toq:AS13, 7tor:AS13, 7tql:N, 7ucj:NN, 7uck:NN, 4ug0:SN, 4ujc:CN, 4ujd:CN, 4uje:BN, 4v6x:AN, 5vyc:N1, 5vyc:N2, 5vyc:N3, 5vyc:N4, 5vyc:N5, 5vyc:N6, 6w2s:O, 6w2t:O, 7wts:N, 7wtt:N, 7wtu:N, 7wtv:N, 7wtw:N, 7wtx:N, 7wtz:N, 7wu0:N, 6xa1:SN, 7xnx:SN, 7xny:SN, 8xsx:SN, 8xsy:SN, 8xsz:SN, 8xxl:SN, 8xxm:SN, 8xxn:SN, 6y0g:SN, 8y0w:SN, 8y0x:SN, 6y2l:SN, 6y57:SN, 6yal:P, 6yam:P, 6yan:P, 6ybw:I, 8yoo:SN, 8yop:SN, 6z6l:SN, 6z6m:SN, 6z6n:SN, 7zjw:SY, 7zjx:SY, 6zlw:N, 6zm7:SN, 6zme:SN, 6zmi:SN, 6zmo:SN, 6zmt:N, 6zmw:I, 6zn5:N, 6zoj:N, 6zok:N, 6zon:m, 6zp4:m, 6zuo:N, 6zv6:N, 6zvh:N, 6zvj:m, 6zvk:F3, 6zxd:N, 6zxe:N, 6zxf:N, 6zxg:N, 6zxh:N
16 4v6w:AN 150 149 0.4228 0.4200 0.4228 1.39e-38 6xu6:AN, 6xu7:AN, 6xu8:AN
17 9bh5:AN 151 149 0.4362 0.4305 0.4362 1.96e-38 9cai:AN
18 5xyi:N 150 149 0.3960 0.3933 0.3960 5.60e-36
19 7qep:C3 146 139 0.3490 0.3562 0.3741 5.75e-33
20 6rm3:SN0 147 140 0.3758 0.3810 0.4000 6.46e-33
21 6zu5:SN0 142 139 0.3826 0.4014 0.4101 1.02e-32
22 8p5d:SN0 142 139 0.3154 0.3310 0.3381 1.91e-28 8p60:SN0, 8p60:RN0, 7qca:SN0
23 8crx:O 87 60 0.1611 0.2759 0.4000 4.94e-04 8cwo:O
24 3j9w:AO 88 58 0.1544 0.2614 0.3966 7.73e-04 8buu:o, 8cdu:O, 8cdv:O, 8cec:O, 8ced:O, 8cee:O, 6ha1:o, 6ha8:o, 6htq:o, 5njt:O, 7o5b:O, 8qcq:o, 7qgu:t, 7qh4:s, 8qpp:O, 7qv1:o, 7qv2:o, 7qv3:o, 8r55:O
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4v7p:DO, 4v7w:AO, 4v7w:CO, 4v7x:AO, 4v7x:CO, 4v7y:AO, 4v7y:CO, 4v7z:AO, 4v7z:CO, 4v83:AO, 4v83:CO, 4v84:AO, 4v84:CO, 4v87:BR, 4v87:CR, 4v8a:DO, 4v8a:CO, 4v8b:AR, 4v8b:CR, 4v8c:CR, 4v8c:DR, 4v8d:AR, 4v8d:CR, 4v8e:BR, 4v8e:DR, 4v8f:BR, 4v8f:CR, 4v8g:AO, 4v8g:CO, 4v8h:AO, 4v8h:CO, 4v8i:AO, 4v8i:CO, 4v8j:AO, 4v8j:CO, 4v8n:AO, 4v8n:CO, 4v8o:AO, 4v8q:BO, 4v8u:AO, 4v8u:CO, 4v8x:AO, 4v8x:CO, 5v8i:1o, 5v8i:2o, 4v90:AO, 4v95:AO, 4v95:CO, 4v97:AO, 4v97:CO, 4v9a:AR, 4v9a:CR, 4v9b:AR, 4v9b:CR, 4v9h:AO, 4v9i:AO, 4v9i:CO, 4v9j:AO, 4v9j:CO, 4v9k:AO, 4v9k:CO, 4v9l:AO, 4v9l:CO, 4v9m:AO, 4v9m:CO, 4v9n:AO, 4v9n:CO, 4v9q:BO, 4v9q:DO, 4v9r:AO, 4v9r:CO, 4v9s:AO, 4v9s:CO, 5vp2:1o, 5vp2:2o, 5vpo:QO, 5vpo:XO, 5vpp:QO, 5vpp:XO, 2vqe:O, 2vqf:O, 8vtu:1o, 8vtu:2o, 8vtv:1o, 8vtv:2o, 8vtw:1o, 8vtw:2o, 8vtx:1o, 8vtx:2o, 8vty:1o, 8vty:2o, 1vvj:QO, 1vvj:XO, 1vy4:AO, 1vy4:CO, 1vy5:AO, 1vy5:CO, 1vy6:AO, 1vy6:CO, 1vy7:AO, 1vy7:CO, 4w29:AO, 4w29:CO, 4w2e:o, 4w2f:AO, 4w2f:CO, 4w2g:AO, 4w2g:CO, 4w2h:AO, 4w2h:CO, 4w2i:AO, 4w2i:CO, 4w4g:QO, 4w4g:XO, 5w4k:1o, 5w4k:2o, 5wis:1o, 5wis:2o, 5wit:1o, 5wit:2o, 5wnp:O, 5wnq:O, 5wnr:O, 5wns:O, 5wnt:O, 5wnu:O, 5wnv:O, 4wpo:BO, 4wpo:DO, 4wq1:6I, 4wq1:6A, 4wqf:BO, 4wqf:DO, 4wqr:6I, 4wqr:6A, 4wqu:BO, 4wqu:DO, 4wqy:BO, 4wqy:DO, 4wr6:6I, 4wr6:6A, 4wra:6I, 4wra:6A, 4wro:6I, 4wsd:6I, 4wsd:6A, 4wsm:6I, 4wsm:6A, 4wt1:6I, 4wt1:6A, 4wt8:AO, 4wt8:BO, 4wu1:6I, 4wu1:6A, 4wzd:6I, 4wzd:6A, 4wzo:6I, 4wzo:6A, 4x62:O, 4x64:O, 4x65:O, 4x66:O, 4xej:AS15, 4xej:BS15, 6xhv:1o, 6xhv:2o, 6xhw:1o, 6xhw:2o, 6xhx:1o, 6xhx:2o, 6xhy:1o, 6xhy:2o, 1xmo:O, 1xmq:O, 1xnq:O, 1xnr:O, 6xqd:1o, 6xqd:2o, 6xqe:1o, 6xqe:2o, 4y4o:1o, 4y4o:2o, 4y4p:1o, 4y4p:2o, 4yhh:O, 4ypb:QO, 4ypb:XO, 4yy3:O, 4yzv:QO, 4yzv:XO, 4z3s:1o, 4z3s:2o, 4z8c:1o, 4z8c:2o, 4zer:1o, 4zer:2o, 5zlu:T, 2zm6:O, 4zsn:QO, 4zsn:XO
41 4v61:AO 85 28 0.0940 0.1647 0.5000 2.6 6eri:BO, 5mmj:o, 5mmm:o, 5x8p:o, 5x8r:o
42 8fmw:O 88 34 0.0872 0.1477 0.3824 4.0
43 4f1m:A 278 64 0.1477 0.0791 0.3438 4.3 4f0f:A, 4f1o:A, 4f1t:A, 4yzm:A, 4yzm:B, 4yzn:A
44 2gwr:A 225 26 0.0805 0.0533 0.4615 4.8 3nhz:B, 3nhz:C, 3nhz:D
45 8jup:A 288 41 0.0872 0.0451 0.3171 5.2 8juv:A
46 6yw5:OO 276 56 0.1074 0.0580 0.2857 6.8 6ywe:OO, 6ywx:OO, 6ywy:OO
47 7np8:B 620 52 0.1007 0.0242 0.2885 6.9 7np8:A, 7np8:C, 7np8:D
48 4pua:A 261 46 0.0940 0.0536 0.3043 7.8
49 8rdu:B 87 45 0.1007 0.1724 0.3333 8.3 8rkt:B
50 4mby:A 277 31 0.0805 0.0433 0.3871 9.1 4mby:B, 4mby:C, 4mby:D, 4mby:E, 4mby:G, 4mby:I, 4mby:H, 4mby:J, 4mby:F, 4mbz:B, 4mbz:A, 4mbz:C, 4mbz:E, 4mbz:D, 4mbz:I, 4mbz:H, 4mbz:J, 4mbz:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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