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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARGTLYIVAAPSGAGKSSIVNATLARDPQIALSISFTSRAMRPGEVNGQHYHFVSAEKFEQMIAAGDFFEHAWVHGDWKG
TARQSVEPQLAAGQDVLLEIDWQGAQQVRQLVPGTVTVFILPPSKQALQDRSEAVIAQRLGAARDEMLHFNEFDYVIVNE
VFDTAVDELCAIFTASRLRREAQKVRHAGLIQALLTPD

The query sequence (length=198) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7s5e:D 207 205 1.0000 0.9565 0.9659 2.20e-144 7s5e:A, 7s5e:B, 7s5e:C, 7s5e:E, 7s5e:F, 7s5e:G, 7s5e:H, 6wct:A, 6wct:B, 6wct:C, 6wct:D
2 2anb:A 206 204 0.5354 0.5146 0.5196 1.01e-67 2an9:A, 2an9:B, 2f3r:A, 2f3r:B, 2f3t:A, 2f3t:B, 2f3t:E, 2f3t:F
3 8egl:C 203 200 0.5152 0.5025 0.5100 4.13e-67 8egl:A, 8egl:B, 8egl:D, 8egl:E, 8egl:F, 8egl:G, 8egl:H, 8egl:I, 8egl:J, 8egl:K, 8egl:L, 7u5f:A, 7u5f:B, 7u5f:C, 7u5f:D
4 3tr0:A 201 200 0.4596 0.4527 0.4550 3.06e-59
5 1zny:A 183 180 0.3535 0.3825 0.3889 1.59e-37 1znx:A, 1znz:A
6 4qrh:B 186 192 0.3384 0.3602 0.3490 5.11e-34 2j41:B, 2j41:C, 2j41:D, 4qrh:C, 4qrh:D
7 3lnc:A 188 193 0.3333 0.3511 0.3420 1.28e-31 3lnc:B
8 1lvg:A 190 170 0.3081 0.3211 0.3588 2.90e-31
9 8pts:A 195 174 0.3131 0.3179 0.3563 6.83e-29 8pts:B
10 1ex7:A 186 174 0.3131 0.3333 0.3563 1.12e-27 1gky:A
11 6mfu:A 216 182 0.2929 0.2685 0.3187 6.52e-23 6mfu:B, 6mfu:C, 6mfu:D
12 2qor:A 196 166 0.2374 0.2398 0.2831 5.07e-18
13 4wsi:A 372 183 0.2828 0.1505 0.3060 4.68e-16 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
14 7sqc:1C 1700 158 0.2475 0.0288 0.3101 6.92e-12 7sqc:1D
15 7sqc:1C 1700 119 0.1717 0.0200 0.2857 0.004 7sqc:1D
16 7sqc:1A 1639 153 0.2323 0.0281 0.3007 1.97e-07
17 7sqc:1A 1639 119 0.1717 0.0207 0.2857 0.004
18 3uat:A 276 122 0.1667 0.1196 0.2705 1.62e-06
19 5ypr:A 267 93 0.1414 0.1049 0.3011 1.94e-06 7f7g:A, 7f7g:B, 7f7i:A, 7f7i:D, 7f7i:B, 7f7i:C, 7f7i:E, 7f7i:F, 5gnv:A, 1jxm:A, 3wp0:A, 3wp1:B, 5ypo:B, 5ypo:A
20 3tvt:A 255 116 0.1869 0.1451 0.3190 1.11e-05
21 7sqc:1B 1660 115 0.1667 0.0199 0.2870 2.26e-05
22 7sqc:1B 1660 155 0.2020 0.0241 0.2581 7.42e-04
23 7ykg:A 188 65 0.0909 0.0957 0.2769 5.10e-04 7ykf:A, 7ykf:C, 7ykg:C, 7ykh:A, 7ykh:C, 7yki:A, 7yki:C
24 6et3:B 275 78 0.1061 0.0764 0.2692 0.62
25 2gj8:D 172 53 0.0859 0.0988 0.3208 0.76 2gj8:A, 2gj8:B, 2gj8:C, 2gj9:A, 2gj9:B, 2gj9:C, 2gj9:D, 2gja:A, 2gja:B
26 8swn:A 1135 76 0.1162 0.0203 0.3026 1.4
27 2vf8:B 835 69 0.1010 0.0240 0.2899 1.5 2vf7:A, 2vf7:C
28 2vf7:B 813 69 0.1010 0.0246 0.2899 1.6 2vf8:A
29 3l92:A 159 35 0.0606 0.0755 0.3429 2.4
30 2e87:A 356 47 0.0657 0.0365 0.2766 2.6
31 2oo4:A 226 36 0.0707 0.0619 0.3889 3.3 2oo4:B
32 3pqc:B 194 72 0.0909 0.0928 0.2500 3.5 3pqc:A
33 4rh7:A 3005 84 0.1364 0.0090 0.3214 3.5
34 6sc2:B 3930 84 0.1364 0.0069 0.3214 3.7 6rla:A, 6rla:B, 6sc2:A
35 1o8c:A 324 40 0.0909 0.0556 0.4500 4.4 1o8c:B, 1o8c:C, 1o8c:D
36 5dgr:A 573 45 0.0606 0.0209 0.2667 4.7 5dgr:B
37 1u0l:A 278 41 0.0657 0.0468 0.3171 5.1 1u0l:B, 1u0l:C
38 3uwx:A 945 43 0.0808 0.0169 0.3721 5.5
39 3ux8:A 564 61 0.0960 0.0337 0.3115 5.6
40 7vb3:B 414 36 0.0606 0.0290 0.3333 6.1 7vb3:A, 7vb3:C, 7vb3:D, 7vb5:A, 7vb5:B, 7vb5:C, 7vb5:D, 7vb6:A, 7vb6:B, 7vb6:C, 7vb6:D
41 2r6f:A 899 61 0.0960 0.0211 0.3115 6.8
42 2r6f:B 879 61 0.0960 0.0216 0.3115 7.0
43 5uz4:Z 323 28 0.0657 0.0402 0.4643 7.1 4a2i:V, 7boi:W, 7nar:W, 5no2:Z, 5no3:Z, 5no4:Z, 2rcn:A, 2ykr:W
44 8hw2:A 1375 24 0.0606 0.0087 0.5000 8.7 8hw4:A
45 5dn8:A 405 37 0.0556 0.0272 0.2973 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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