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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARDLTAFQKNILTVLGEEARYGLAIKRELEEYYGEEVNHGRLYPNLDDLVNKGLVEKSELDKRTNEYALTNEGFDAVVDD
LEWTLSKFVADADRRERVETIVADDAAALE

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qfd:B 116 110 1.0000 0.9483 1.0000 2.86e-75 6qfd:A, 6qfd:C, 6qfd:D, 6qh0:C, 6qh0:D, 6qh0:A, 6qh0:B, 6qil:A, 6qil:B, 6qil:C, 6qil:D, 6qua:A, 6qua:B, 6qua:C, 6qua:D
2 4v3p:SC 195 100 0.2727 0.1538 0.3000 0.39 8ip8:eb, 8ip9:eb, 8ipa:eb, 8ipb:eb, 8jiw:BJ, 8r6f:J, 4v7e:BJ
3 7jps:B 199 74 0.2000 0.1106 0.2973 0.47
4 8baq:A 208 28 0.1091 0.0577 0.4286 0.68 8bar:A, 8bas:A
5 2w41:B 507 69 0.1727 0.0375 0.2754 0.88 2w40:A, 2w40:B, 2w40:C, 2w40:D, 2w41:A
6 7qix:Q 184 100 0.2636 0.1576 0.2900 1.1 8auv:b, 8b2l:b1, 7qiz:GA
7 7suk:LP 359 35 0.1455 0.0446 0.4571 1.7 5wlc:LP
8 5zi8:A 104 78 0.2182 0.2308 0.3077 1.8 7wh4:A, 7wh4:B, 5zhv:A, 5zhv:B, 5zi8:B
9 6tcv:B 397 116 0.2818 0.0781 0.2672 1.9
10 7d4i:B6 377 35 0.1455 0.0424 0.4571 3.2 7ajt:UF, 7d5s:B6, 7d5t:B6, 7d63:B6, 6ke6:B6, 6lqp:B6, 6lqq:B6, 6lqr:B6, 6lqs:B6, 6lqt:B6, 6lqu:B6, 6lqv:B6, 6zqa:UF, 6zqb:UF, 6zqc:UF
11 2qgy:A 376 32 0.1091 0.0319 0.3750 3.9 2qgy:B
12 6ya7:A 350 44 0.1182 0.0371 0.2955 6.7 6ya6:A, 6ya8:A
13 6git:A 507 30 0.1000 0.0217 0.3667 9.0 6giz:A, 6gj2:A, 6gj9:A, 6gja:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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