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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARCVRLSAERAKLLLAEVDTLLFNCDGVLWRGETAVPGAPETLRALRARGKRLGFITNNSSKTRTAYAEKLRRLGFGGPV
GPEAGLEVFGTAYCSALYLRQRLAGVPDPKAYVLGSPALAAELEAVGVTSVGVGPDVLHGDGPSDWLAVPLEPDVRAVVV
GFDPHFSYMKLTKAVRYLQQPDCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFIFDCVSQEYGI
NPERTVMVGDRLDTDILLGSTCSLKTILTLTGVSSLEDVKSNQESDSMFKKKMVPDFYVDSIADLLPALQG

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7po7:H 311 311 1.0000 1.0000 1.0000 0.0 7poe:A, 7poe:B
2 4bkm:A 304 309 0.6688 0.6842 0.6731 1.87e-149 4bkm:B, 4bkm:C, 4bkm:D
3 5gyn:A 295 312 0.4630 0.4881 0.4615 1.00e-82 5aes:A, 5aes:B, 4bx0:A, 4bx2:A, 4bx2:B, 4bx3:A, 4bx3:B, 2cfr:A, 2cfs:A, 2cft:A, 9em1:A, 2oyc:A, 2p27:A, 2p69:A, 8qfw:A, 8qfw:B, 8s8a:A
4 1zjj:B 263 291 0.3183 0.3764 0.3402 2.29e-41 1zjj:A
5 4jdp:B 265 295 0.2669 0.3132 0.2814 3.69e-27 4jdp:A, 3qgm:A, 3qgm:B, 3qgm:C, 3qgm:D
6 2c4n:A 250 265 0.2669 0.3320 0.3132 7.02e-25
7 4o8c:B 255 274 0.2540 0.3098 0.2883 1.05e-23
8 1ydf:A 255 259 0.2186 0.2667 0.2625 3.92e-19
9 4i9f:A 336 268 0.2637 0.2440 0.3060 1.29e-18 4i9g:A, 4i9g:B
10 2hx1:A 284 285 0.2315 0.2535 0.2526 6.49e-15 2hx1:B, 2hx1:C, 2hx1:D
11 2ho4:B 252 253 0.2219 0.2738 0.2727 6.83e-11 2ho4:A
12 2x4d:A 270 301 0.2251 0.2593 0.2326 1.36e-07
13 2x4d:B 213 144 0.1158 0.1690 0.2500 2.90e-06
14 4knv:A 241 126 0.1222 0.1577 0.3016 0.040 4knv:B, 4knw:A, 4knw:B, 4knw:C
15 3kc2:B 319 301 0.2283 0.2226 0.2359 0.45
16 8e7f:A 614 50 0.0643 0.0326 0.4000 0.71
17 3r09:A 197 32 0.0450 0.0711 0.4375 0.88 2ybd:A
18 6n6q:B 448 61 0.0611 0.0424 0.3115 0.97 6n6q:A, 6n6q:C, 6n6q:D
19 4een:A 229 45 0.0707 0.0961 0.4889 1.0
20 3ocu:A 247 60 0.0579 0.0729 0.3000 1.5 3et4:A, 3et5:A, 3ocv:A, 3ocw:A, 3ocx:A, 3ocy:A, 3ocz:A, 3sf0:A
21 4oxq:A 278 74 0.0547 0.0612 0.2297 2.2 4oxr:A, 4oxr:B
22 4ex6:A 219 124 0.1061 0.1507 0.2661 2.2 4ex7:A
23 8q5w:G 281 45 0.0547 0.0605 0.3778 2.4 8q5w:A, 8q5w:B, 8q5w:C, 8q5w:D, 8q5w:E, 8q5w:F, 8q5w:H, 8q5w:I, 8q5w:J, 8q5w:K, 8q5w:L
24 3ndr:A 247 109 0.0868 0.1093 0.2477 6.0 3ndr:B, 3ndr:C, 3ndr:D, 3nug:A, 3nug:B, 3nug:C, 3nug:D, 3rwb:A, 3rwb:B, 3rwb:C, 3rwb:D
25 7eew:A 610 86 0.0643 0.0328 0.2326 7.0
26 4yzg:A 294 35 0.0386 0.0408 0.3429 7.6 4yzg:B, 4yzh:A
27 5dn8:A 405 64 0.0611 0.0469 0.2969 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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