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BioLiP
>protein
AQWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADG
ITAAGRNGVLEIRIPKR

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gla:B 99 96 0.9897 0.9697 1.0000 3.31e-67 3gla:A
2 5zs3:A 113 89 0.2887 0.2478 0.3146 5.13e-09 5zs6:A
3 7oa6:B 152 96 0.3299 0.2105 0.3333 4.10e-07 7oa6:I
4 4yl9:D 123 97 0.3299 0.2602 0.3299 2.11e-05
5 3l1e:A 105 90 0.2165 0.2000 0.2333 0.003
6 3vqm:A 111 93 0.2887 0.2523 0.3011 0.009 3vqm:B, 3vqm:C, 3vqm:E, 3vqm:F, 3vqm:I, 3vqm:K, 3vqm:M, 3vqm:N
7 5lum:A 78 81 0.2371 0.2949 0.2840 0.15 5lum:B, 5lum:D, 5lum:C, 5lum:E
8 6ei1:A 335 23 0.1031 0.0299 0.4348 2.2
9 7m4u:d 207 55 0.1649 0.0773 0.2909 6.6 7m4w:d, 7m4x:d, 7m4y:d, 7m4z:d, 7ryf:d, 7ryg:d, 7ryh:d, 7uvv:d, 7uvw:d, 7uvx:d, 7uvy:d, 7uvz:d, 7uw1:d, 6v39:d, 6v3a:d, 6v3b:d, 6v3e:d, 6ypu:e, 6yt9:e
10 4rjw:A 426 45 0.1237 0.0282 0.2667 7.2 4rjx:A
11 4a48:B 69 25 0.0722 0.1014 0.2800 8.2 4a48:A, 4a4j:A, 2xmw:A
12 7xx4:A 395 21 0.0825 0.0203 0.3810 9.2 2iyf:A, 2iyf:B, 4m83:A, 4m83:B, 7xx4:B
13 8c8v:A 1032 29 0.1340 0.0126 0.4483 9.3 8c8u:A, 8c8w:A, 8c9d:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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