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BioLiP
>protein
AQTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4a48:B 69 69 1.0000 1.0000 1.0000 4.40e-47 4a48:A, 4a4j:A, 2xmw:A
2 1kqk:A 80 64 0.3623 0.3125 0.3906 2.20e-11
3 1oq6:A 76 65 0.3478 0.3158 0.3692 9.02e-11
4 1afj:A 72 68 0.3623 0.3472 0.3676 1.01e-09
5 1mwz:A 73 63 0.3333 0.3151 0.3651 1.91e-09
6 1kvj:A 79 68 0.3188 0.2785 0.3235 1.27e-08 3cjk:B, 2k1r:A, 5t7l:B
7 1fvs:A 72 69 0.2464 0.2361 0.2464 4.62e-07 2ggp:B
8 6ff2:A 67 60 0.3188 0.3284 0.3667 6.14e-07 6ff2:B
9 1k0v:A 73 60 0.2754 0.2603 0.3167 8.21e-07 3i9z:A, 2qif:A, 2qif:B
10 6a71:B 71 68 0.3623 0.3521 0.3676 1.20e-06 6a72:A
11 1s6u:A 76 44 0.2464 0.2237 0.3864 2.53e-06
12 8ioy:A 816 64 0.2899 0.0245 0.3125 6.68e-06
13 1yjt:A 75 62 0.2754 0.2533 0.3065 3.94e-05 1yjv:A
14 7si6:A 873 65 0.3333 0.0263 0.3538 1.04e-04 7si3:A, 7si7:A
15 7si6:A 873 64 0.2754 0.0218 0.2969 6.74e-04 7si3:A, 7si7:A
16 1y3j:A 77 65 0.2754 0.2468 0.2923 1.17e-04
17 3dxs:X 74 73 0.2899 0.2703 0.2740 0.14
18 6rm3:SNN 167 58 0.2464 0.1018 0.2931 0.90
19 8ghh:A 276 35 0.1884 0.0471 0.3714 0.95 8ghi:A
20 8q74:A 783 61 0.2174 0.0192 0.2459 1.0 8q75:A, 8q76:A
21 7zel:A 827 45 0.2464 0.0206 0.3778 1.4 7zel:B, 7zep:B, 7zes:A, 7zes:B
22 6yhs:P 92 50 0.1739 0.1304 0.2400 1.7 7m4v:S, 7m4w:S, 7m4x:S, 7m4y:S, 7m4z:S, 7ryf:S, 7ryg:S, 7ryh:S, 7uvv:S, 7uvw:S, 7uvx:S, 7uvy:S, 7uvz:S, 7uw1:S, 6v39:S, 6v3a:S, 6v3b:S, 6v3d:S, 6ysi:P
23 4v8p:BC 409 19 0.1304 0.0220 0.4737 4.2 4v8p:CC, 4v8p:EC, 4v8p:GC
24 3gla:B 99 25 0.1014 0.0707 0.2800 6.1 3gla:A
25 2p1n:B 571 51 0.1884 0.0228 0.2549 8.0 3c6n:B, 3c6o:B, 3c6p:B, 2p1m:B, 2p1n:E, 2p1o:B, 2p1p:B, 2p1q:B
26 1ee8:A 266 25 0.1159 0.0301 0.3200 8.1 1ee8:B
27 4y2i:A 65 64 0.1739 0.1846 0.1875 8.6
28 5goo:A 447 31 0.1884 0.0291 0.4194 9.5 5goo:B, 5goo:C, 5gop:A, 5gop:C, 5gop:B, 5goq:A, 5goq:B, 5goq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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