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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AQQAVLRKELIATSTNVIKSEISLRILASECHLTLNGIVEAEAQYKMGGLPKSRLPKIKHPMIVTKWVDYSNKHGFSYQL
STEDIGVLFNNGTTVLRLADAEEFWYISYDDREGWVASHYLLSEKPRELSRHLEVVDFFAKYMKANLHKDDVFLRRYTRY
KPFVMFELSDGTFQFNFKDHHKMAISDGGKLVTYISPSHESTTYPLVEVLKYGEIPGYPESNFREKLTLIKEGLKQKSTI
VTVD

The query sequence (length=244) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mf5:B 262 251 0.9713 0.9046 0.9442 2.57e-171 6mf4:A, 6mf5:A, 6mf6:B, 6mf6:A
2 4o56:A 244 191 0.2377 0.2377 0.3037 4.75e-21 6ax4:A, 3bzi:A, 3c5l:A, 8crc:A, 4dfw:A, 5dms:A, 5dms:C, 5dmv:C, 5dnj:A, 4e67:A, 4e9c:A, 4e9d:A, 3fvh:A, 6gy2:B, 6gy2:A, 4h71:A, 4hab:A, 4hab:B, 4hab:C, 4hco:A, 3hik:A, 4hy2:A, 5j19:B, 5j19:A, 8joq:A, 8joy:A, 4lkl:A, 4lkm:A, 4lkm:C, 7mso:A, 7mso:B, 7mx1:A, 7mx1:B, 5nei:A, 5nfu:A, 5nje:A, 5nmm:A, 5nn2:A, 4o6w:A, 4o9w:A, 2ojx:A, 3p2z:A, 3p34:A, 3p35:A, 3p35:B, 3p36:A, 3p37:A, 3p37:B, 3p37:C, 3q1i:A, 1q4k:A, 1q4k:B, 1q4k:C, 4rcp:A, 3rq7:A, 8s30:A, 8s31:A, 8s31:B, 1umw:A, 1umw:B, 8wfp:A, 8wfp:B, 4whh:A, 4whk:A, 4whl:A, 5x3s:B, 5x3s:A, 4x9r:A, 4x9v:A, 4x9w:A
3 2ak5:B 64 53 0.0697 0.2656 0.3208 1.3 2df6:A, 2df6:B
4 4e6r:A 58 49 0.0574 0.2414 0.2857 2.4
5 5kax:A 158 55 0.0697 0.1076 0.3091 2.7 5kax:B
6 3zrj:B 165 50 0.0656 0.0970 0.3200 3.4 3zrj:A
7 5lhz:A 78 38 0.0410 0.1282 0.2632 3.4 5lhz:B, 5lhz:C
8 7nqg:AAA 317 38 0.0574 0.0442 0.3684 3.5
9 1djo:A 330 48 0.0615 0.0455 0.3125 5.6 1djo:B, 1djp:A, 1djp:B, 4pga:A, 4pga:B, 6wyw:A, 6wyw:B, 6wyw:C, 6wyw:D, 6wyx:A, 6wyx:B, 6wyx:C, 6wyx:D, 6wyy:A, 6wyy:B, 6wyy:C, 6wyy:D, 6wyz:A, 6wyz:B, 6wyz:C, 6wyz:D, 6wz4:A, 6wz4:B, 6wz4:C, 6wz4:D, 6wz6:A, 6wz6:B, 6wz6:C, 6wz6:D
10 5ngl:B 454 43 0.0615 0.0330 0.3488 6.6 5ngl:A, 5ngl:C
11 6v9q:H 135 16 0.0410 0.0741 0.6250 9.9 6vbw:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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