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BioLiP
>protein
AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY
YGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGSEEVIAKRMAQAVAEMSHYAEYDY
LIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLA

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2anb:A 206 205 1.0000 0.9757 0.9805 6.39e-148 2an9:A, 2an9:B, 2f3r:A, 2f3r:B, 2f3t:A, 2f3t:B, 2f3t:E, 2f3t:F
2 8egl:C 203 203 0.6169 0.6108 0.6108 1.23e-83 8egl:A, 8egl:B, 8egl:D, 8egl:E, 8egl:F, 8egl:G, 8egl:H, 8egl:I, 8egl:J, 8egl:K, 8egl:L, 7u5f:A, 7u5f:B, 7u5f:C, 7u5f:D
3 7s5e:D 207 204 0.5323 0.5169 0.5245 4.85e-69 7s5e:A, 7s5e:B, 7s5e:C, 7s5e:E, 7s5e:F, 7s5e:G, 7s5e:H, 6wct:A, 6wct:B, 6wct:C, 6wct:D
4 3tr0:A 201 202 0.4677 0.4677 0.4653 3.99e-61
5 1ex7:A 186 186 0.4229 0.4570 0.4570 5.19e-45 1gky:A
6 3lnc:A 188 198 0.3831 0.4096 0.3889 2.10e-42 3lnc:B
7 4qrh:B 186 195 0.3483 0.3763 0.3590 5.62e-39 2j41:B, 2j41:C, 2j41:D, 4qrh:C, 4qrh:D
8 1lvg:A 190 182 0.3781 0.4000 0.4176 1.09e-38
9 8pts:A 195 183 0.3682 0.3795 0.4044 6.05e-36 8pts:B
10 1zny:A 183 182 0.3234 0.3552 0.3571 4.52e-35 1znx:A, 1znz:A
11 6mfu:A 216 183 0.3483 0.3241 0.3825 2.53e-32 6mfu:B, 6mfu:C, 6mfu:D
12 7sqc:1C 1700 158 0.3035 0.0359 0.3861 2.86e-22 7sqc:1D
13 7sqc:1C 1700 186 0.2239 0.0265 0.2419 1.03e-07 7sqc:1D
14 7sqc:1C 1700 60 0.0945 0.0112 0.3167 0.054 7sqc:1D
15 2qor:A 196 177 0.2736 0.2806 0.3107 6.65e-22
16 7sqc:1A 1639 158 0.2935 0.0360 0.3734 2.79e-18
17 7sqc:1A 1639 186 0.2239 0.0275 0.2419 1.10e-07
18 4wsi:A 372 175 0.2935 0.1586 0.3371 4.38e-17 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
19 7sqc:1B 1660 155 0.2537 0.0307 0.3290 3.61e-12
20 7sqc:1B 1660 182 0.2338 0.0283 0.2582 6.01e-09
21 7sqc:1B 1660 60 0.0945 0.0114 0.3167 0.049
22 3tvt:A 255 152 0.2139 0.1686 0.2829 4.34e-09
23 5ypr:A 267 149 0.2040 0.1536 0.2752 6.64e-08 7f7g:A, 7f7g:B, 7f7i:A, 7f7i:D, 7f7i:B, 7f7i:C, 7f7i:E, 7f7i:F, 5gnv:A, 1jxm:A, 3wp0:A, 3wp1:B, 5ypo:B, 5ypo:A
24 3uat:A 276 149 0.2139 0.1558 0.2886 9.18e-08
25 7ykg:A 188 55 0.1095 0.1170 0.4000 5.45e-05 7ykf:A, 7ykf:C, 7ykg:C, 7ykh:A, 7ykh:C, 7yki:A, 7yki:C
26 8swn:A 1135 45 0.0995 0.0176 0.4444 0.036
27 8wbx:B 467 156 0.1841 0.0792 0.2372 0.19
28 8pj1:u 706 72 0.1144 0.0326 0.3194 1.1 8pj2:u, 8pj3:u, 8pj4:u, 8pj5:u, 8pj6:u, 8rg0:u, 6w2s:1, 6w2t:1
29 8z0f:A 549 33 0.0547 0.0200 0.3333 1.2 8z0f:B
30 8z9x:B 567 33 0.0547 0.0194 0.3333 1.3 8z9x:A
31 1ofd:A 1491 42 0.0697 0.0094 0.3333 1.3 1ofd:B, 1ofe:A, 1ofe:B
32 1llw:A 1475 42 0.0697 0.0095 0.3333 1.4 1llz:A, 1lm1:A
33 2yv5:A 293 37 0.0746 0.0512 0.4054 1.4
34 6n8m:V 393 20 0.0498 0.0254 0.5000 1.6 5h4p:w, 8hfr:vV, 6n8k:v, 6n8l:v, 6n8n:V, 6n8o:V, 6qik:w, 6qtz:w, 6rzz:w, 6s05:w, 5t62:V, 5t6r:V, 7z34:v
35 8wi0:A 1220 38 0.0647 0.0107 0.3421 1.8 8kci:A, 8wi2:A, 8wi5:A
36 4nk5:A 258 55 0.0846 0.0659 0.3091 1.8 4nk5:C, 4nk5:D, 4nk5:E
37 8hw2:A 1375 23 0.0647 0.0095 0.5652 1.9 8hw4:A
38 5w81:A 1173 67 0.0846 0.0145 0.2537 1.9
39 4arz:A 291 176 0.2040 0.1409 0.2330 2.0 6jwp:A, 6jwp:F, 3r7w:A, 3r7w:C
40 8ipr:C 515 25 0.0547 0.0214 0.4400 2.0 8ipr:E
41 8iza:A 1246 45 0.0796 0.0128 0.3556 2.2 8iz7:A, 8iz9:A, 8xok:A
42 4u00:A 241 36 0.0597 0.0498 0.3333 2.2
43 8bjf:A 1195 45 0.0796 0.0134 0.3556 2.3 8bwp:A, 8bwq:A, 8bwr:A, 8sx7:A, 8sx8:A, 8sxb:A
44 8i4a:A 1218 45 0.0796 0.0131 0.3556 2.3 8bwo:A, 8i4c:A, 8j3w:A, 8j3z:A, 8xol:A, 8xom:A
45 8jxu:A 1410 38 0.0746 0.0106 0.3947 2.4 8jxq:A
46 3qf7:A 357 22 0.0547 0.0308 0.5000 2.4 3qf7:B, 3tho:A, 4w9m:C, 4w9m:I, 4w9m:E, 4w9m:K
47 1knp:A 529 29 0.0597 0.0227 0.4138 2.5 1knr:A
48 5uak:A 1139 67 0.0846 0.0149 0.2537 2.8 2bbs:B, 7svr:A, 8v81:A
49 6msm:A 1181 67 0.0846 0.0144 0.2537 2.9 8eig:A, 8eio:A, 8eiq:A, 8fzq:A, 6gjq:A, 6gjq:C, 6gjq:E, 6gjq:G, 6gjs:A, 6gk4:A, 6gk4:D, 6gkd:A, 6gkd:L, 6gkd:F, 6gkd:I, 6gkd:O, 6gkd:R, 8gls:A, 6o1v:A, 6o2p:A, 2pze:A, 2pze:B, 2pzf:A, 2pzf:B, 2pzg:A, 2pzg:B, 7sv7:A, 7svd:A, 5tf7:A, 5tf8:A, 5tfa:A, 5tfb:A, 5tfc:A, 5tfd:A, 5tff:A, 5tfg:A, 5tfi:A, 5tfj:A, 5tgk:A, 8ubr:A, 6wbs:A, 6wbs:B, 6ze1:A
50 8v7z:A 1104 69 0.0945 0.0172 0.2754 2.9
51 3pih:A 836 66 0.0995 0.0239 0.3030 3.1
52 6n9l:A 625 66 0.0995 0.0320 0.3030 3.7
53 5uz4:Z 323 25 0.0647 0.0402 0.5200 4.3 4a2i:V, 7boi:W, 7nar:W, 5no2:Z, 5no3:Z, 5no4:Z, 2rcn:A, 2ykr:W
54 7eov:A 274 68 0.0846 0.0620 0.2500 4.3 7d1x:A, 7d1x:B
55 6ae9:A 253 24 0.0547 0.0435 0.4583 5.1 6ae9:B
56 5a5b:R 400 48 0.0746 0.0375 0.3125 5.2 4cr2:R, 4cr3:R, 4cr4:R, 6j2c:R, 6j2n:R, 6j2q:R, 6j2x:R, 6j30:R, 5wvi:R, 5wvk:R
57 7rr9:A 560 29 0.0547 0.0196 0.3793 5.8 7rr9:B, 7vx8:B, 7vx8:A
58 5eg1:B 576 21 0.0448 0.0156 0.4286 5.8 5eg1:A, 5ofr:A, 5ofr:B, 4pl0:A, 4pl0:B, 8px9:A, 8px9:B
59 6s85:D 375 24 0.0448 0.0240 0.3750 6.0 6s6v:C, 6s6v:D, 6s85:C, 7yzo:C, 7yzo:D, 7z03:D, 7z03:C
60 5l53:A 294 41 0.0796 0.0544 0.3902 6.0
61 3l92:A 159 25 0.0498 0.0629 0.4000 6.3
62 7yzp:C 448 24 0.0448 0.0201 0.3750 6.4 7yzp:D
63 7x0z:B 580 29 0.0547 0.0190 0.3793 6.4 7shm:A, 7shm:B, 7x0z:A
64 7x07:A 633 29 0.0547 0.0174 0.3793 6.7 7shn:A, 7shn:B, 7vzb:A, 7vzb:B, 7x0t:A, 7x0t:B, 7x1w:A, 7x1w:B, 7xec:A, 7yrq:A, 7yrq:B
65 4ymu:J 240 22 0.0398 0.0333 0.3636 7.6 4ymu:A, 4ymv:J, 4ymv:A
66 3c41:J 242 22 0.0448 0.0372 0.4091 7.7 3c41:K, 3c4j:A, 3c4j:B, 2olj:A, 2olj:B, 2olk:A, 2olk:B, 2olk:C, 2olk:D, 2q0h:A, 2q0h:B
67 5ck3:F 147 38 0.0597 0.0816 0.3158 7.7
68 7yq0:A 173 18 0.0498 0.0578 0.5556 7.9 7yq0:B, 7yq1:A, 7yq1:B, 7yq1:C, 7yq1:D, 7yq1:E, 7yq1:F
69 6sh3:A 376 18 0.0498 0.0266 0.5556 8.0 6sh3:B, 6sh3:C, 6sh3:D, 6sh3:E, 6sh3:F, 6sh3:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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