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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AQESPAFIDPASWNTPFNGIAQVACHNCYEKQYANTFSSVLDSVRTLELDFWDQRDAVSGGSPHHWFVRHNPGTLFQSGN
DNNCTGDGTGKNDLEACLNDVKNWSDKHPGHFPITLILDKKQGWSKESSGRTPKDFDELVARVFQGKLFTPQDLATHIGS
GAGALQGNLKGKSWPTANDLQGKVLLVLNHSENQKLSQYAEARTSKAKVFISPVTNGQNDISGKVSGMSSQSSGYVAMNN
MGKGDKSWAKQAFAYSHIGRVWGDDEVSFAQHINQKINLSAYYRFAAQSAGGYRIRPF

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fyo:A 298 298 1.0000 1.0000 1.0000 0.0 5fyo:B, 5fyp:A, 5fyp:B, 5fyp:C, 5fyp:D, 5fyr:A, 5fyr:B, 5fyr:C, 5fyr:D
2 7l6x:A 256 98 0.0638 0.0742 0.1939 0.70 6bqd:A, 6bqd:B, 6df4:A, 6df7:A, 6df7:B, 6fic:T, 5i1q:A, 5i29:A, 7jjg:A, 7jsp:A, 7jtc:A, 7k03:A, 7k0d:A, 7k0u:A, 7k0u:B, 7k1p:A, 7k27:A, 7lb0:A, 7lb1:A, 7lb2:A, 7lb3:A, 5mg2:A, 7n42:A, 6p38:A, 6p39:A, 6p3a:A, 6p3a:B, 7p4s:A, 7t2i:A, 7t36:A, 4yym:A, 4yym:B, 4yyn:A, 4yyn:B
3 8jh1:B 462 85 0.0805 0.0519 0.2824 0.74 8jbb:A, 8jbb:B, 8jh1:A
4 4bqh:A 521 67 0.0671 0.0384 0.2985 2.1
5 7vr4:A 340 40 0.0503 0.0441 0.3750 7.7
6 6sml:B 911 51 0.0537 0.0176 0.3137 9.4 6sli:B, 6sli:D, 6sli:G, 6sli:J, 6slj:B, 6slj:A, 6sln:B, 6sln:A, 6sm3:B, 6smq:B, 6smq:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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