Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV
DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIA
AKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILK
FQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNIPFEGDKKSFLE
DIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVEN
CQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG

The query sequence (length=473) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jkv:A 482 473 0.9450 0.9274 0.9450 0.0 2jkv:B, 2jkv:C, 2jkv:D, 2jkv:E, 2jkv:F, 1pgn:A, 1pgo:A, 1pgp:A, 1pgq:A, 5uq9:E, 5uq9:F
2 2p4q:A 476 477 0.6596 0.6555 0.6541 0.0
3 2w90:B 471 469 0.5708 0.5732 0.5757 0.0 2w8z:A, 2w8z:B, 2w90:A
4 7cb5:B 467 464 0.5539 0.5610 0.5647 0.0 7cb2:A, 7cb2:B, 7cb2:C, 7cb2:D, 7cb5:A, 7cb5:C, 7cb5:D
5 2iz1:B 471 470 0.5645 0.5669 0.5681 0.0 2iyo:A, 2iyp:A, 2iyp:B, 2iyp:C, 2iz0:A, 2iz0:B, 2iz0:C, 2iz1:A, 2iz1:C
6 3fwn:A 467 468 0.5328 0.5396 0.5385 0.0 3fwn:B, 2zya:A, 2zya:B, 2zyd:A, 2zyd:B
7 8i4q:A 479 472 0.4905 0.4843 0.4915 1.36e-162 8i4q:B
8 6fqy:A 468 471 0.4482 0.4530 0.4501 3.27e-138 6fqy:B, 6fqz:A, 6fqz:B
9 8c79:A 478 469 0.3721 0.3682 0.3753 2.70e-98 8c79:B
10 6vpb:B 324 313 0.2347 0.3426 0.3546 7.60e-45
11 2cvz:C 289 186 0.1099 0.1799 0.2796 3.28e-09 2cvz:A, 2cvz:B, 1wp4:A, 1wp4:B, 1wp4:C, 1wp4:D
12 5u5g:A 286 224 0.1121 0.1853 0.2366 2.82e-05 5u5g:B, 5u5g:C, 5u5g:D
13 3w6z:A 296 234 0.1184 0.1892 0.2393 1.53e-04 3w6u:A, 3ws7:A, 5xvh:A
14 8j44:A 293 111 0.0592 0.0956 0.2523 0.049 8j44:B, 8whg:B, 8whg:E, 8whg:F
15 2i9p:B 296 217 0.0994 0.1588 0.2166 0.077 2i9p:A, 2i9p:C, 2i9p:D
16 4d3f:B 289 123 0.0592 0.0969 0.2276 0.14
17 8bk1:A 288 123 0.0613 0.1007 0.2358 0.17 8bj5:A, 8bj5:B, 8bj5:C, 8bj5:D, 8bk1:B, 8bk1:C, 8bk1:D
18 4oqy:A 268 42 0.0338 0.0597 0.3810 0.24
19 6jiz:C 295 126 0.0634 0.1017 0.2381 0.44 6jit:B, 6jit:C, 6jiz:B
20 2uyy:A 292 43 0.0317 0.0514 0.3488 0.73 2uyy:D
21 5imt:A 460 74 0.0381 0.0391 0.2432 1.1
22 7y8m:B 288 40 0.0317 0.0521 0.3750 1.9 7y8l:A, 7y8l:B, 7y8l:C, 7y8l:D, 7y8m:A, 7y8m:C, 7y8m:D, 7y8n:A, 7y8n:B, 7y8o:A, 7y8o:B
23 7a3w:B 293 125 0.0571 0.0922 0.2160 2.3 7a3w:A
24 3b1f:A 286 169 0.0888 0.1469 0.2485 2.5
25 3pef:A 287 201 0.0994 0.1638 0.2338 3.3 3pef:B, 3pef:C, 3pef:D, 3pef:E, 3pef:F, 3pef:G, 3pef:H
26 8ix9:C 314 81 0.0465 0.0701 0.2716 4.8 8ix9:B, 8ix9:A, 8ixh:A, 8ixh:B, 8ixh:C, 8ixm:A, 8ixm:B
27 4q4a:A 572 50 0.0381 0.0315 0.3600 5.4 3qf4:A, 6quz:A, 6quz:C, 6qv0:A, 6qv0:C, 6qv1:A, 6qv1:C, 6qv2:A, 6qv2:C
28 8jyt:C 286 42 0.0338 0.0559 0.3810 6.5 8jyt:A, 8jyt:B, 8jyt:D
29 6smt:B 289 33 0.0296 0.0484 0.4242 7.2 6smt:A, 6smt:C, 6smt:D, 6smt:E

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218