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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APYINAAFRSSSEYEVYFFAKNKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSGNH
SAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGNKYVRIAYDSKQLVGNIRNIGDGFP
VLNGTEFESGIDACFASHKEPEAYLFKGQNYVRIDFTPGGKADTLVGNIRPILDGWPVLKGIFPV

The query sequence (length=225) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3oyo:A 225 225 1.0000 1.0000 1.0000 9.69e-168 3oyo:B
2 4ll2:B 224 223 0.5644 0.5670 0.5695 4.74e-86 4oei:A, 4oei:B, 3s18:A, 3s18:B, 3v6n:A, 3v6n:B, 4yeh:A, 4yeh:B
3 3lp9:A 227 224 0.5244 0.5198 0.5268 7.71e-76 3lp9:B, 3lp9:C, 3lp9:D
4 1gxd:A 624 184 0.1956 0.0705 0.2391 0.004 1ck7:A, 1eak:A, 1eak:B, 1eak:D, 1eak:C, 1gen:A, 1gxd:B, 1rtg:A
5 1gxd:A 624 158 0.1511 0.0545 0.2152 8.3 1ck7:A, 1eak:A, 1eak:B, 1eak:D, 1eak:C, 1gen:A, 1gxd:B, 1rtg:A
6 3ba0:A 365 85 0.0978 0.0603 0.2588 0.68 8b2n:A, 8b2n:C, 5cxa:A, 5czm:A, 5d2b:A, 5d3c:A, 4efs:A, 3ehx:A, 3ehy:A, 6ekn:A, 6ela:A, 6ela:B, 6ela:C, 6ela:D, 6enm:A, 6enm:B, 6eox:A, 3f15:A, 3f16:A, 3f17:A, 3f18:A, 3f19:A, 3f1a:A, 4gql:A, 4gr0:A, 4gr3:A, 4gr8:A, 4guy:A, 4h30:A, 4h30:B, 4h49:A, 4h49:B, 4h49:C, 4h49:D, 4h76:A, 4h84:A, 4h84:B, 2hu6:A, 4i03:A, 5i0l:A, 5i0l:B, 5i2z:A, 5i2z:B, 5i2z:C, 5i2z:D, 5i3m:A, 5i3m:B, 5i3m:C, 5i3m:D, 5i43:A, 5i43:B, 5i43:C, 5i43:D, 5i4o:A, 5i4o:C, 5i4o:B, 5i4o:D, 4ijo:A, 1jiz:A, 1jiz:B, 1jk3:A, 2jxy:A, 2k2g:A, 2k9c:A, 2krj:A, 5l79:A, 5l7f:A, 5l7f:B, 5lab:A, 3lik:A, 3lil:A, 3lir:A, 3ljg:A, 3lk8:A, 3lka:A, 2mlr:A, 2mls:A, 3n2u:A, 3n2v:A, 5n5j:A, 5n5k:A, 2n8r:A, 3nx7:A, 1os2:A, 1os2:B, 1os2:C, 1os2:D, 1os2:E, 1os2:F, 1os9:A, 1os9:B, 1os9:C, 1os9:D, 1os9:E, 1os9:F, 7ovy:A, 2oxu:A, 2oxw:A, 2oxz:A, 2poj:A, 6rd0:A, 8rij:A, 6rly:A, 1rmz:A, 1ros:A, 1ros:B, 3rts:A, 3rtt:A, 3ts4:A, 3tsk:A, 1utt:A, 1utz:A, 1utz:B, 3uvc:A, 3uvc:B, 2w0d:A, 2w0d:B, 2w0d:C, 2w0d:D, 2wo8:A, 2wo8:B, 2wo8:C, 2wo8:D, 2wo9:A, 2wo9:B, 2wo9:C, 2wo9:D, 2woa:A, 2woa:B, 2woa:C, 2woa:D, 1y93:A, 1ycm:A, 2z2d:A, 1z3j:A
7 1fbl:A 367 147 0.1556 0.0954 0.2381 0.68
8 3jze:A 344 46 0.0756 0.0494 0.3696 0.92 3jze:B, 3jze:C, 3jze:D
9 5gxd:A 627 48 0.0844 0.0303 0.3958 1.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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