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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APVYLCLLGNDPAPAYLGLKVVEREAGRVAKAVFYSFPAWNEEYGKKRQAFFRLLSEKGVLYEERPLEKGLEEAEAREVW
VNLTGGAKYWAVRFLGHWRRPGARVFLVEGHRALEAPRALFLWPREEERSLEAEALTLEEYARLYLEPLGEAWERVSPPG
AFPPGAQAARLPGREGGVFVVHRGLPYWYWVRPHLGGEAKDMSRKALSAFSGEAKRLGGQLCLPVVPYHKAHLRSRHPKE
RENVFARWRAWAREYGVFLVDPGRPLEEEVASLIKGKASKKALPLPQEGPLLLALVSEQAVPLYAAYLHAGPREVYLLTT
PEMESRLRWAEAFFRGKGVRVHRSFLSGPWALREVRDLLAPVVEEALRRGHPVHANLNSGTTAMALGLYLALRDGARAHY
LDGDRLLLLDGGEAEVPWEEGRPEDLLALRGYRFEEEYPDARPDPGLLALAEEILRRWDEVLVRRFLKFWKKRFGQAFPP
RLKGLPLEYAVYSHLNAHLAPKGGQARMGGHLVPLTEVDGVFFHRGALWFVECKPTDEGLRERAPIMAELVRSVGGVEAR
GLMVARRWRGAPPPASPNLVYMALEGGEGVGVYRFPEELEKALSRNPAPRRGLE

The query sequence (length=614) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sce:A 614 614 1.0000 1.0000 1.0000 0.0
2 8bao:A 368 162 0.0586 0.0978 0.2222 0.092 8bao:B
3 7to3:C 357 89 0.0407 0.0700 0.2809 1.8 7d4j:A, 7d4o:A, 7d4o:B, 7d4s:A, 7d4u:A, 7ljl:A, 7ljl:B, 7to3:D, 7tqd:C
4 7all:AAA 498 61 0.0228 0.0281 0.2295 3.0
5 3c41:J 242 25 0.0228 0.0579 0.5600 5.2 3c41:K, 3c4j:A, 3c4j:B, 2olj:A, 2olj:B, 2olk:A, 2olk:B, 2olk:C, 2olk:D, 2q0h:A, 2q0h:B
6 7ljm:A 348 81 0.0391 0.0690 0.2963 6.1 7ljm:B
7 8any:e 238 81 0.0407 0.1050 0.3086 8.2 3j7y:e, 7odr:e, 7ods:e, 7odt:e, 8oir:Bv, 8oit:Bv, 8pk0:e, 7po4:e, 7qi4:e, 7qi5:e, 7qi6:e, 8qsj:e, 6zm5:e, 6zm6:e

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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