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BioLiP
>protein
APTLYIFPHAGGTAKDYVAFSREFSADVKRIAVQYPGQHDRSGLPPLESIPTLADEIFAMMKPSARIDDPVAFFGHSMGG
MLAFEVALRYQSAGHRVLAFFVSACSAPGHIRYKQLQDLSDREMLDLFTRMTGMNPDFFTDDEFFVGALPTLRAVRAIAG
YSCPPETKLSCPIYAFIGDKDWIATQDDMDPWRDRTTEEFSIRVFPGDHFYLNDNLPELVSDIEDKTLQWHDR

The query sequence (length=233) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fw5:A 233 233 1.0000 1.0000 1.0000 3.24e-176 6fvj:D, 6fvj:E, 6fw5:B, 6fw5:D
2 6fvj:B 212 233 0.9056 0.9953 0.9056 1.13e-151 6fvj:A, 6fvj:C, 6fvj:F, 6fvj:G, 6fvj:H, 6fw5:C
3 2h7y:A 280 232 0.2275 0.1893 0.2284 2.98e-05 9cgl:A, 9cgl:B, 9cgn:A, 9cgn:B, 2h7x:A, 2h7x:B, 2h7y:B, 2hfj:A, 2hfk:A, 2hfk:B
4 6ecd:A 245 222 0.2275 0.2163 0.2387 3.57e-04 6ece:B
5 6n8e:A 1332 235 0.2103 0.0368 0.2085 0.006
6 4zxh:A 1314 128 0.1373 0.0244 0.2500 0.009 4zxi:A
7 6ecf:D 265 238 0.2275 0.2000 0.2227 0.14 6ece:A, 6ecf:A, 6ecf:B, 6ecf:C, 6ecf:E, 6ecf:F
8 5d3k:A 269 152 0.1674 0.1450 0.2566 0.40 5d3z:A
9 6eb3:B 268 36 0.0730 0.0634 0.4722 0.61 6eb3:A, 6eb3:C, 6eb3:D
10 2wjs:A 519 93 0.1030 0.0462 0.2581 0.70
11 6skz:A 2638 56 0.0858 0.0076 0.3571 1.8 6sl0:A, 6sl0:B
12 6sl1:A 2652 56 0.0858 0.0075 0.3571 1.8 6sky:A, 6sky:B
13 5ja2:A 1238 94 0.1030 0.0194 0.2553 2.1 5ja1:A, 5t3d:A
14 8clu:A 309 117 0.1159 0.0874 0.2308 2.8 8clu:B, 8clv:A, 8clv:B, 8clv:C, 8clv:D
15 3i6y:A 278 54 0.0773 0.0647 0.3333 3.2 3i6y:B, 3s8y:A
16 5olu:A 310 60 0.0601 0.0452 0.2333 5.0
17 1y7i:B 262 40 0.0644 0.0573 0.3750 6.0 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
18 2vsq:A 1273 30 0.0515 0.0094 0.4000 7.3
19 8hgw:A 288 38 0.0644 0.0521 0.3947 7.4 8hgw:B, 8hgw:C, 8hgw:D
20 6khm:K 312 39 0.0601 0.0449 0.3590 8.1 6khl:A, 6khl:B, 6khm:A, 6khm:B, 6khm:C, 6khm:D, 6khm:E, 6khm:F, 6khm:G, 6khm:H, 6khm:I, 6khm:J, 6khm:L, 6khm:M, 6khm:N, 6khm:O, 6khm:P, 6khm:Q, 6khm:R, 6khm:S, 6khm:T, 6khm:U, 6khm:V, 6khm:X, 6khm:Y, 6khm:W, 6khm:Z
21 8clq:B 309 117 0.1202 0.0906 0.2393 8.1 8clq:A, 8clq:C, 8clq:D
22 3uar:A 203 42 0.0644 0.0739 0.3571 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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