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BioLiP
>protein
APTLYIFPHAGGTAKDYVAFSREFSADVKRIAVQYPGLPPLESIPTLADEIFAMMKPSARIDDPVAFFGHSMGGMLAFEV
ALRYQSAGHRVLAFFVSACSAPGHIRYKQLQDLSDREMLDLFTRMFVGALPTLRAVRAIAGYSCPPETKLSCPIYAFIGD
KDWIATQDDMDPWRDRTTEEFSIRVFPGDHFYLNDNLPELVSDIEDKTLQWHD

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fvj:B 212 213 0.9859 0.9906 0.9859 6.20e-156 6fvj:A, 6fvj:C, 6fvj:F, 6fvj:G, 6fvj:H, 6fw5:C
2 6fw5:A 233 232 1.0000 0.9142 0.9181 1.67e-153 6fvj:D, 6fvj:E, 6fw5:B, 6fw5:D
3 6ecd:A 245 216 0.2488 0.2163 0.2454 9.53e-06 6ece:B
4 2h7y:A 280 224 0.2441 0.1857 0.2321 6.03e-05 9cgl:A, 9cgl:B, 9cgn:A, 9cgn:B, 2h7x:A, 2h7x:B, 2h7y:B, 2hfj:A, 2hfk:A, 2hfk:B
5 4zxh:A 1314 128 0.1549 0.0251 0.2578 0.002 4zxi:A
6 5d3k:A 269 143 0.1784 0.1413 0.2657 0.007 5d3z:A
7 6n8e:A 1332 232 0.2300 0.0368 0.2112 0.008
8 6ecf:D 265 93 0.1268 0.1019 0.2903 0.010 6ece:A, 6ecf:A, 6ecf:B, 6ecf:C, 6ecf:E, 6ecf:F
9 6eb3:B 268 36 0.0798 0.0634 0.4722 0.57 6eb3:A, 6eb3:C, 6eb3:D
10 2qo3:B 873 119 0.1549 0.0378 0.2773 0.80 2qo3:A
11 6sl1:A 2652 56 0.0939 0.0075 0.3571 0.91 6sky:A, 6sky:B
12 6skz:A 2638 56 0.0939 0.0076 0.3571 0.93 6sl0:A, 6sl0:B
13 5ja2:A 1238 89 0.1127 0.0194 0.2697 1.8 5ja1:A, 5t3d:A
14 3i6y:A 278 54 0.0845 0.0647 0.3333 2.7 3i6y:B, 3s8y:A
15 4pa5:A 242 164 0.2019 0.1777 0.2622 4.2
16 1y7i:B 262 40 0.0704 0.0573 0.3750 5.5 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
17 5olu:A 310 68 0.0657 0.0452 0.2059 5.6
18 2vsq:A 1273 30 0.0563 0.0094 0.4000 7.3
19 6khm:K 312 38 0.0657 0.0449 0.3684 7.8 6khl:A, 6khl:B, 6khm:A, 6khm:B, 6khm:C, 6khm:D, 6khm:E, 6khm:F, 6khm:G, 6khm:H, 6khm:I, 6khm:J, 6khm:L, 6khm:M, 6khm:N, 6khm:O, 6khm:P, 6khm:Q, 6khm:R, 6khm:S, 6khm:T, 6khm:U, 6khm:V, 6khm:X, 6khm:Y, 6khm:W, 6khm:Z
20 5b2o:A 1455 61 0.0751 0.0110 0.2623 8.9 5b2p:A, 5b2q:A
21 8hgw:A 288 38 0.0704 0.0521 0.3947 9.1 8hgw:B, 8hgw:C, 8hgw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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