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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APSWDLAGYLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVVSL
EDFMENLAPSHWPPEKRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYKEQWTQRFPAK
EHPVLALPGAPAQFPVLEEHRELQKYMVWSDEMVRTGEALISAHLVRPYVGIHLRIGSDWKNACAMLGSHFMASPQCVGY
SRSTATPLTMTMCLPDLKEIQRAVTLWVRALNARSVYIATDSESYVSEIQQLFKDKVRVVSLKPEVAQIDLYILGQADHF
IGNCVSSFTAFVKRERDLHGRQSSFFGMD

The query sequence (length=349) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ky2:A 355 354 1.0000 0.9831 0.9859 0.0 5kxh:A, 5ky0:A, 5ky3:A, 5ky4:A, 5ky5:A, 5ky7:A, 5ky8:A, 5ky9:A, 5uxh:A, 5uxh:B
2 5kxq:A 327 346 0.9370 1.0000 0.9451 0.0 5kxq:B, 5kxq:C, 5kxq:D
3 3zy5:A 356 361 0.4069 0.3989 0.3934 1.13e-87 3zy2:A, 3zy3:A, 3zy3:B, 3zy6:A
4 4ap6:A 389 368 0.2464 0.2211 0.2337 1.58e-05 4ap6:B, 4ap6:C, 4ap6:D
5 5foe:B 435 341 0.1862 0.1494 0.1906 2.92e-05 5foe:A
6 8jw0:M 168 128 0.0917 0.1905 0.2500 1.2 8jze:M, 8jzf:M
7 5n61:Q 389 63 0.0544 0.0488 0.3016 1.3
8 4e4f:B 381 155 0.0888 0.0814 0.2000 5.9 4e4f:C, 4il2:A, 4il2:C, 4il2:D
9 6w64:A 928 28 0.0315 0.0119 0.3929 9.2
10 7ood:u 86 28 0.0287 0.1163 0.3571 9.6 7p6z:u, 7pah:u, 7pai:u, 7paj:u, 7pak:u, 7pal:u, 7pam:u, 7pan:u, 7pao:u, 7paq:u, 7par:u, 7pas:u, 7pat:u, 7pau:u, 7ph9:u, 7pha:u, 7phb:u, 7phc:u, 7pi8:u, 7pi9:u, 7pia:u, 7pib:u, 7pic:u, 7pio:u, 7pip:u, 7piq:u, 7pir:u, 7pis:u, 7pit:u

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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