Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APPTLPPYFMKGSIIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPGVAVIQFAVGEHRAQVSVEVL
VEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLTLK

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4j2l:B 123 123 1.0000 1.0000 1.0000 1.49e-88 4j2j:A, 4j2j:B, 4j2j:C, 4j2l:A, 2m41:B
2 1khr:A 206 43 0.1301 0.0777 0.3721 0.18 3dho:A, 3dho:C, 3dho:B, 3dho:D, 3dho:F, 3dho:E, 1khr:B, 1khr:C, 1khr:D, 1khr:E, 1khr:F, 1kk4:A, 1kk4:B, 1kk4:C, 1kk4:D, 1kk4:E, 1kk4:F, 1mr9:A, 1mr9:C, 1mr9:B, 1mr9:X, 1mr9:Z, 1mr9:Y, 1mrl:A, 1mrl:B, 1mrl:C
3 4ymp:A 112 76 0.1789 0.1964 0.2895 0.39 4ymp:C
4 3jap:p 634 38 0.1301 0.0252 0.4211 1.8 6fyx:q, 6fyy:q
5 6gsn:q 675 38 0.1301 0.0237 0.4211 1.8 8cah:q, 8cas:q, 6gsm:q, 8s8e:p, 4uer:c, 6zce:q, 6zu9:q
6 7xbx:R 349 33 0.0976 0.0344 0.3636 2.3 7xbw:R
7 8cou:A 413 76 0.1545 0.0460 0.2500 3.9 4b7v:A, 4b7v:B, 8cn2:B, 8cn2:A, 8cn4:A, 8cn4:B, 8cn5:B, 8cn5:A, 8cn7:A, 8cn7:B, 8cne:A, 8cne:B, 8cng:A, 8cng:B, 8cou:B, 8cov:A, 8cov:B, 4jb6:A, 4jb6:B, 4jpf:A, 7oc0:A, 7oc0:B, 7oc1:A, 7oc1:B, 8pd1:A, 8pd1:B, 8pfz:A, 8pfz:B, 8pj0:A, 8pj0:B, 8pj0:C, 8pj0:D, 8qer:A, 8qer:B, 8qm1:A, 8qm1:B, 8r0i:A, 8r0i:B, 8r1v:A, 8r1v:B, 5sn5:A, 5sn6:A, 5sn7:A, 5sn7:B, 5sn8:A, 5sn9:A, 5sna:B, 5snb:A, 5snc:A, 5snd:A, 5snd:B, 5sne:A, 5sne:B, 5snf:A, 5sng:A, 5snh:A, 5snh:B, 5sni:A, 5sni:B, 5snj:A, 5snj:B, 5snk:A, 5snl:B, 5snm:A, 5snn:A, 5snn:B, 5sno:A, 5sno:B, 5snp:A, 5snp:B, 5snq:B, 5sns:B, 5snt:A, 5snu:A, 5snu:B, 5snv:A, 5snv:B, 5snw:A, 5snx:A, 5snx:B, 5sny:A, 5snz:B, 5so0:A, 5so0:B, 5so1:A, 5so1:B, 5so2:A, 5so2:B, 5so3:A, 5so4:A, 5so4:B, 5so5:A, 5so5:B, 5so6:A, 5so7:A, 5so7:B, 5so8:A, 5so8:B, 5so9:B, 5soa:A, 5sob:A, 5sob:B, 5soc:A, 5soc:B, 5sod:A, 5soe:A, 5soe:B, 5sof:A, 5sog:A, 5sog:B, 5soh:A
8 6ahr:J 247 25 0.0894 0.0445 0.4400 5.2 6ahr:I, 6ahu:I, 6ahu:J
9 6lx2:A 523 32 0.1057 0.0249 0.4062 7.4 6lx1:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218