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BioLiP
>protein
APPLTLDGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIAD
KKDVYE

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ak6:U 88 86 1.0000 0.9773 1.0000 3.07e-57 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
2 8ba0:U 85 85 0.7326 0.7412 0.7412 3.43e-40 8ba0:T, 8esz:AC
3 8e73:AB 85 71 0.4535 0.4588 0.5493 2.99e-24
4 8bee:U 87 71 0.4419 0.4368 0.5352 1.81e-22 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
5 7b0n:U 88 80 0.4070 0.3977 0.4375 1.02e-19 6rfq:Q, 6rfr:Q, 6y79:Q
6 7ar7:T 84 75 0.4186 0.4286 0.4800 7.52e-19 7ar8:T, 8bq6:T
7 6sga:Fc 84 76 0.4186 0.4286 0.4737 1.74e-18 6sgb:Fc, 6yxy:EK
8 7zmb:Q 85 78 0.3721 0.3765 0.4103 7.84e-17 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
9 2eht:A 77 73 0.3605 0.4026 0.4247 1.18e-15
10 2fac:A 77 70 0.3605 0.4026 0.4429 1.62e-15 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
11 8iuf:AB 88 69 0.3372 0.3295 0.4203 1.20e-14 8j9h:AB, 8j9i:AB, 8j9j:AB
12 8jfh:E 79 61 0.3488 0.3797 0.4918 1.96e-14 8jfn:B
13 3gzl:A 81 56 0.3256 0.3457 0.5000 1.47e-13 2fq0:A, 2fq2:A, 3gzm:B
14 8iuf:AC 92 69 0.3372 0.3152 0.4203 9.70e-13 8j9h:AC, 8j9i:AC, 8j9j:AC
15 2qnw:A 80 60 0.3023 0.3250 0.4333 1.08e-11
16 7arc:U 84 69 0.2791 0.2857 0.3478 8.33e-11 7ard:U
17 2x2b:A 76 59 0.3023 0.3421 0.4407 8.97e-11
18 7b0n:T 81 68 0.3605 0.3827 0.4559 1.37e-09 6gcs:O, 7o6y:O, 6rfq:O, 6rfr:O, 6rfs:O, 6y79:O
19 6lvu:A 78 59 0.2674 0.2949 0.3898 4.23e-08 6lvu:B
20 2fva:A 82 51 0.2442 0.2561 0.4118 2.28e-06
21 2koo:A 81 57 0.2326 0.2469 0.3509 4.63e-05 2kop:A, 2koq:A, 2kor:A, 2kos:A
22 2ll8:A 101 51 0.2209 0.1881 0.3725 7.84e-05
23 2k0x:A 86 43 0.1860 0.1860 0.3721 0.003 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
24 5kp8:B 78 76 0.2791 0.3077 0.3158 0.005
25 6kfu:A 527 59 0.2093 0.0342 0.3051 0.026 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
26 5hv8:A 95 37 0.1628 0.1474 0.3784 0.26
27 4bph:A 85 45 0.1628 0.1647 0.3111 0.67
28 8qzi:E 86 55 0.1977 0.1977 0.3091 1.00 7bdw:B, 6rcx:B
29 2jes:A 370 47 0.1744 0.0405 0.3191 2.9 2jes:C, 2jes:E, 2jes:G, 2jes:I, 2jes:K, 2jes:M, 2jes:O, 2jes:Q, 2jes:S, 2jes:U, 2jes:W, 2jes:Y
30 7f2r:B 79 28 0.1163 0.1266 0.3571 3.3
31 6v6s:k 370 33 0.1395 0.0324 0.3636 6.0 6v5v:g, 6v6s:a, 6v6s:b, 6v6s:c, 6v6s:d, 6v6s:e, 6v6s:f, 6v6s:g, 6v6s:h, 6v6s:i, 6v6s:j, 6v6s:l, 6v6s:m, 6v6s:t
32 3ik7:A 221 24 0.1163 0.0452 0.4167 6.3 1gul:A, 1gul:B, 1gul:C, 1gul:D, 1gul:E, 1gul:F, 1gul:G, 1gul:H, 3ik7:B, 3ik7:C, 3ik7:D
33 4uyq:A 143 30 0.1047 0.0629 0.3000 6.9
34 1jba:A 189 84 0.2791 0.1270 0.2857 6.9
35 3lba:A 260 28 0.1163 0.0385 0.3571 7.9
36 5v69:A 322 66 0.2558 0.0683 0.3333 8.2 6bi8:A, 6bi8:B, 5ko3:A, 4p16:A, 4pt5:A, 4r3d:B, 4r3d:A, 4rez:A, 4rf0:A, 4rf1:A, 4rna:A, 5v6a:A, 5w8t:A, 5w8t:C, 5w8u:A, 5w8u:C, 4wur:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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