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BioLiP
>protein
APMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNSLLIAKVTSQRIACPRPYCKRIINLGPVHP
G

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8oqh:A 81 81 1.0000 1.0000 1.0000 9.89e-55 8oqh:B
2 1khw:B 497 42 0.1728 0.0282 0.3333 0.47 1khw:A
3 1iru:B 233 19 0.0988 0.0343 0.4211 4.7 8bzl:O, 8bzl:A, 1iru:P
4 1ici:A 256 45 0.1728 0.0547 0.3111 5.3 1ici:B, 1m2g:A, 1m2h:A, 1m2j:A, 1m2k:A, 1m2n:A, 1m2n:B, 4twi:A
5 2g2r:L 219 17 0.1111 0.0411 0.5294 5.8 2g2r:A
6 7zke:E 1623 37 0.1481 0.0074 0.3243 8.0
7 3pmq:A 593 34 0.1235 0.0169 0.2941 8.3
8 4j9w:A 310 25 0.1358 0.0355 0.4400 8.9 4j9w:B, 4j9x:A, 4j9x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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